نتایج جستجو برای: phylogeography

تعداد نتایج: 3088  

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2016
Scott V Edwards Sally Potter C Jonathan Schmitt Jason G Bragg Craig Moritz

Phylogeography, and its extensions into comparative phylogeography, have their roots in the layering of gene trees across geography, a paradigm that was greatly facilitated by the nonrecombining, fast evolution provided by animal mtDNA. As phylogeography moves into the era of next-generation sequencing, the specter of reticulation at several levels-within loci and genomes in the form of recombi...

2009
Leo Joseph Kevin E. Omland

With examples from Australo-Papuan ornithology, we examine the technical and theoretical roots of molecular phylogeography and review its development. We describe the progression from ad hoc interpretation of gene trees in single species phylogeographic studies through to comparative phylogeography and currently advocated model-testing approaches. Mitochondrial DNA (mtDNA) sequences have provid...

2015
Rosane G. Collevatti Levi C. Terribile José A. F. Diniz-Filho Matheus S. Lima-Ribeiro

Comparative phylogeography has its roots in classical biogeography and, historically, relies on a pattern-based approach. Here, we present a model-based framework for comparative phylogeography. Our framework was initially developed for statistical phylogeography based on a multi-model inference approach, by coupling ecological niche modeling, coalescent simulation and direct spatio-temporal re...

2012
A. Márcia Barbosa Guillermo Thode Raimundo Real Carlos Feliu J. Mario Vargas

Phylogeographic studies, which infer population history and dispersal movements from intra-specific spatial genetic variation, require expensive and time-consuming analyses that are not always feasible, especially in the case of rare or endangered species. On the other hand, comparative phylogeography of species involved in close biotic interactions may show congruent patterns depending on the ...

Journal: :Molecular ecology 2013
John E McCormack Brant C Faircloth

It has been a tumultuous 5 years in phylogeography and phylogenetics during which both fields have struggled to harness the power of next-generation sequencing (NGS) (Ekblom & Galindo 2010; McCormack et al. 2012a). Fortunately, several methodological approaches appear to be taking root. In this issue of Molecular Ecology, O’Neill et al. (2013) employ one such method – parallel tagged sequencing...

2006
David M. Kidd Michael G. Ritchie

Phylogeography is concerned with the principles and processes governing the geographical distributions of genealogical lineages, especially those at the intraspecific level (Avise, 1998, 2000). Phylogeographic study is undergoing a major expansion as the range of convenient genetic markers available to study geographic variation increases. Ultimately, the aim of phylogeography might be defined ...

2015
Scott V. Edwards Allison J. Shultz Shane C. Campbell-Staton

Phylogeography is experiencing a revolution brought on by next-generation sequencing methods. A historical survey of the phylogeographic literature suggests that phylogeography typically incorporates new questions, expanding on its classical domain, when new technologies offer novel or increased numbers of molecular markers. A variety of methods for subsampling genomic variation, including rest...

Journal: :Molecular phylogenetics and evolution 2010
M J Hickerson B C Carstens J Cavender-Bares K A Crandall C H Graham J B Johnson L Rissler P F Victoriano A D Yoder

Approximately 20 years ago, Avise and colleagues proposed the integration of phylogenetics and population genetics for investigating the connection between micro- and macroevolutionary phenomena. The new field was termed phylogeography. Since the naming of the field, the statistical rigor of phylogeography has increased, in large part due to concurrent advances in coalescent theory which enable...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2016
John C Avise Brian W Bowen Francisco J Ayala

Phylogeography is the study of the spatial arrangement of genealogical lineages, especially within and among conspecific populations and closely related species (10). Ever since its inception in the late 1970s (11, 12) and mid-1980s (13), the field has sought to extend phylogenetic reasoning to the intraspecific level, and thereby build empirical and conceptual bridges between the formerly sepa...

Journal: :Current Biology 2005

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