نتایج جستجو برای: metagenomics

تعداد نتایج: 5830  

ژورنال: طلوع بهداشت یزد 2016
احرامپوش, محمد حسن, بنیادی, ضیا الدین, خرد پیشه, زهره, رفعتی, لیدا, صدیقی خویدک, سمانه, مختاری, مهدی, ممتاز, سید مجتبی, چاه متکی, فاطمه,

Introduction: Bacteria are a group of microorganisms which in contrast to their diversity in nature, only very few of them can be grown and isolated in the current standard laboratories. Metagenomics as a new field of research, during the last decade has worked on clarification of the genomes of the non-cultured microbes and researchers around the world with serious study of this group of bacte...

2017
Petra ten Hoopen Robert D. Finn Lars Ailo Bongo Erwan Corre Bruno Fosso Folker Meyer Alex Mitchell Eric Pelletier Graziano Pesole Monica Santamaria Nils Peder Willassen Guy Cochrane

Metagenomics data analyses from independent studies can only be compared if the analysis workflows are described in a harmonized way. In this overview, we have mapped the landscape of data standards available for the description of essential steps in metagenomics: (i) material sampling, (ii) material sequencing, (iii) data analysis, and (iv) data archiving and publishing. Taking examples from m...

2016
Hubert Denise

The EBI Metagenomics portal The EBI Metagenomics portal [6] is a free to use analysis service for metagenomics data. In order to have your data analysed by EBI Metagenomics, your sequence data have to be archived in the European Nucleotide Archive [7] (ENA). This tutorial will explain why you have to follow this procedure and will then guide you through the process of archiving your metagenomic...

2015
Stanislav Birko Edward S. Dove Vural Özdemir Timothy D Read

Access to clean water is a grand challenge in the 21st century. Water safety testing for pathogens currently depends on surrogate measures such as fecal indicator bacteria (e.g., E. coli). Metagenomics concerns high-throughput, culture-independent, unbiased shotgun sequencing of DNA from environmental samples that might transform water safety by detecting waterborne pathogens directly instead o...

Journal: :The Biochemist 2011

2014
Sarah Hunter Matthew Corbett Hubert Denise Matthew Fraser Alejandra González Beltrán Christopher Hunter Philip Jones Rasko Leinonen Craig McAnulla Eamonn Maguire John Maslen Alex L. Mitchell Gift Nuka Arnaud Oisel Sebastien Pesseat Rajesh Radhakrishnan Philippe Rocca-Serra Maxim Scheremetjew Peter Sterk Daniel Vaughan Guy Cochrane Dawn Field Susanna-Assunta Sansone

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data...

2014
M. J. PALLEN

The term 'shotgun metagenomics' is applied to the direct sequencing of DNA extracted from a sample without culture or target-specific amplification or capture. In diagnostic metagenomics, this approach is applied to clinical samples in the hope of detecting and characterizing pathogens. Here, I provide a conceptual overview, before reviewing several recent promising proof-of-principle applicati...

2013
Sarah Hunter Matthew Corbett Hubert Denise Matthew Fraser Alejandra Gonzalez-Beltran Christopher Hunter Philip Jones Rasko Leinonen Craig McAnulla Eamonn Maguire John Maslen Alex Mitchell Gift Nuka Arnaud Oisel Sebastien Pesseat Rajesh Radhakrishnan Philippe Rocca-Serra Maxim Scheremetjew Peter Sterk Daniel Vaughan Guy Cochrane Dawn Field Susanna-Assunta Sansone

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data...

2016
Eamonn P. Culligan Roy D. Sleator

The majority of microbes in many environments are considered " as yet uncultured " and were traditionally considered inaccessible for study through the microbiological gold standard of pure culture. The emergence of metagenomic approaches has allowed researchers to access and study these microbes in a culture-independent manner through DNA sequencing and functional expression of metagenomic DNA...

2017
Espen Mikal Robertsen Hubert Denise Alex Mitchell Robert D Finn Lars Ailo Bongo Nils Peder Willassen

Metagenomics, the study of genetic material recovered directly from environmental samples, has the potential to provide insight into the structure and function of heterogeneous microbial communities.  There has been an increased use of metagenomics to discover and understand the diverse biosynthetic capacities of marine microbes, thereby allowing them to be exploited for industrial, food, and h...

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