نتایج جستجو برای: haloalkane pollutant

تعداد نتایج: 20504  

Journal: :applied biotechnology reports 0
raghunath satpathy v. badireenath konkimalla jagnyeswar ratha

in this report, we describe a procedure for in-silico design of a novel haloalkane dehalogenase protein that exhibits luciferase property which can be potentially used in biosensor applications. from a pdb blast search, the selected haloalkane dehalogenase (pdb code: 1ede) had a close structural homology with a lucifearse (pdb code: 2psj chain a) sharing an identity of 33%. initially, the amino...

Journal: :Acta crystallographica. Section F, Structural biology and crystallization communications 2008
Alena Stsiapanava Tana Koudelakova Mikalai Lapkouski Martina Pavlova Jiri Damborsky Ivana Kuta Smatanova

The enzyme DhaA from Rhodococcus rhodochrous NCIMB 13064 belongs to the haloalkane dehalogenases, which catalyze the hydrolysis of haloalkanes to the corresponding alcohols. The haloalkane dehalogenase DhaA and its variants can be used to detoxify the industrial pollutant 1,2,3-trichloropropane (TCP). Three mutants named DhaA04, DhaA14 and DhaA15 were constructed in order to study the importanc...

Journal: :Applied and environmental microbiology 2002
Andrea Jesenská Milan Bartos Vladimíra Czerneková Ivan Rychlík Ivo Pavlík Jirí Damborský

Haloalkane dehalogenases are microbial enzymes that catalyze cleavage of the carbon-halogen bond by a hydrolytic mechanism. Until recently, these enzymes have been isolated only from bacteria living in contaminated environments. In this report we describe cloning of the dehalogenase gene dhmA from Mycobacterium avium subsp. avium N85 isolated from swine mesenteric lymph nodes. The dhmA gene has...

2014
Rinku Pandey Del Lucent Kirti Kumari Pooja Sharma Rup Lal John G. Oakeshott Gunjan Pandey

Organochlorine insecticide hexachlorocyclohexane (HCH) has recently been classified as a 'Persistent Organic pollutant' by the Stockholm Convention. The LinB haloalkane dehalogenase is a key upstream enzyme in the recently evolved Lin pathway for the catabolism of HCH in bacteria. Here we report a sequence-structure-function analysis of ten naturally occurring and thirteen synthetic mutants of ...

Journal: :Acta crystallographica. Section D, Biological crystallography 2014
Maryna Lahoda Jeroen R Mesters Alena Stsiapanava Radka Chaloupkova Michal Kuty Jiri Damborsky Ivana Kuta Smatanova

Haloalkane dehalogenases catalyze the hydrolytic cleavage of carbon-halogen bonds, which is a key step in the aerobic mineralization of many environmental pollutants. One important pollutant is the toxic and anthropogenic compound 1,2,3-trichloropropane (TCP). Rational design was combined with saturation mutagenesis to obtain the haloalkane dehalogenase variant DhaA31, which displays an increas...

Journal: :Journal of bacteriology 2000
G J Poelarends M Zandstra T Bosma L A Kulakov M J Larkin J R Marchesi A J Weightman D B Janssen

The sequences of the 16S rRNA and haloalkane dehalogenase (dhaA) genes of five gram-positive haloalkane-utilizing bacteria isolated from contaminated sites in Europe, Japan, and the United States and of the archetypal haloalkane-degrading bacterium Rhodococcus sp. strain NCIMB13064 were compared. The 16S rRNA gene sequences showed less than 1% sequence divergence, and all haloalkane degraders c...

Journal: :Protein engineering 1999
J Damborský J Koca

Haloalkane dehalogenases catalyse environmentally important dehalogenation reactions. These microbial enzymes represent objects of interest for protein engineering studies, attempting to improve their catalytic efficiency or broaden their substrate specificity towards environmental pollutants. This paper presents the results of a comparative study of haloalkane dehalogenases originating from di...

Journal: :Applied and environmental microbiology 2005
Andrea Jesenská Martina Pavlová Michal Strouhal Radka Chaloupková Iva Tesínská Marta Monincová Zbynek Prokop Milan Bartos Ivo Pavlík Ivan Rychlík Petra Möbius Yuji Nagata Jiri Damborsky

Haloalkane dehalogenases are enzymes that catalyze the cleavage of the carbon-halogen bond by a hydrolytic mechanism. Genomes of Mycobacterium tuberculosis and M. bovis contain at least two open reading frames coding for the polypeptides showing a high sequence similarity with biochemically characterized haloalkane dehalogenases. We describe here the cloning of the haloalkane dehalogenase genes...

Journal: :Biotechnology journal 2013
Tana Koudelakova Sarka Bidmanova Pavel Dvorak Antonin Pavelka Radka Chaloupkova Zbynek Prokop Jiri Damborsky

Haloalkane dehalogenases (EC 3.8.1.5, HLDs) are α/β-hydrolases which act to cleave carbon-halogen bonds. Due to their unique catalytic mechanism, broad substrate specificity and high robustness, the members of this enzyme family have been employed in several practical applications: (i) biocatalytic preparation of optically pure building-blocks for organic synthesis; (ii) recycling of by-product...

Journal: :Biochimie 2013
Andrea Fortova Eva Sebestova Veronika Stepankova Tana Koudelakova Lenka Palkova Jiri Damborsky Radka Chaloupkova

Haloalkane dehalogenases are known as bacterial enzymes cleaving a carbon-halogen bond in halogenated compounds. Here we report the first biochemically characterized non-microbial haloalkane dehalogenase DspA from Strongylocentrotus purpuratus. The enzyme shows a preference for terminally brominated hydrocarbons and enantioselectivity towards β-brominated alkanes. Moreover, we identified other ...

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