نتایج جستجو برای: metagenomics

تعداد نتایج: 5830  

2014
Fabiana Goés Ronnie Alves Leandro Corrêa Cristian Chaparro Lucinéia Thom

Metagenomics is an emerging field in which the power of genome analysis is applied to entire communities of microbes. It is focused on the understanding of the mixture of genes (genomes) in a community as whole. The gene prediction task is a well-known problem in genomics, and it remains an interesting computational challenge in metagenomics too. A large variety of classifiers has been develope...

2013
Katja Engel Deborah Ashby Sean F. Brady Don A. Cowan John Doemer Elizabeth A. Edwards Klaus Fiebig Eric C. Martens Dennis McCormac David A. Mead Kentaro Miyazaki Gabriel Moreno-Hagelsieb Fergal O’Gara Alexandra Reid David R. Rose Pascal Simonet Sara Sjöling Kornelia Smalla Wolfgang R. Streit Jennifer Tedman-Jones Svein Valla Elizabeth M. H. Wellington Cheng-Cang Wu Mark R. Liles Josh D. Neufeld Angela Sessitsch Trevor C. Charles

This report summarizes the events of the 1(st) International Functional Metagenomics Workshop. The workshop was held on May 7 and 8, 2012, in St. Jacobs, Ontario, Canada and was focused on building an international functional metagenomics community, exploring strategic research areas, and identifying opportunities for future collaboration and funding. The workshop was initiated by researchers a...

Journal: :CBE life sciences education 2007
Anne Jurkowski Ann H Reid Jay B Labov

The pace of research and the development of new areas of focus in biology are increasing at breathtaking speed. Unfortunately, exciting new areas of science typically do not appear in science classrooms and textbooks until many years after their inception. This pattern leaves undergraduate, and especially high school, biology education lagging behind scientific advances. The result is that too ...

2014
Viktor Jonsson

Metagenomics is the study of microbial communities on the genome level by direct sequencing of environmental and clinical samples. Recently developed DNA sequencing technologies have made metagenomics widely applicable and the field is growing rapidly. The statistical analysis is however challenging due to the high variability present in the data which stems from the underlying biological diver...

2016
Saskia Decuypere Conor J. Meehan Sandra Van Puyvelde Tessa De Block Jessica Maltha Lompo Palpouguini Marc Tahita Halidou Tinto Jan Jacobs Stijn Deborggraeve

BACKGROUND Bacterial bloodstream infection (bBSI) is one of the leading causes of death in critically ill patients and accurate diagnosis is therefore crucial. We here report a 16S metagenomics approach for diagnosing and understanding bBSI. METHODOLOGY/PRINCIPAL FINDINGS The proof-of-concept was delivered in 75 children (median age 15 months) with severe febrile illness in Burkina Faso. Stan...

2018
Maria José de la Cruz Peña Francisco Martinez-Hernandez Inmaculada Garcia-Heredia Mónica Lluesma Gomez Òscar Fornas Manuel Martinez-Garcia

Single-cell genomics has unveiled the metabolic potential of dominant microbes inhabiting different environments, including the human body. The lack of genomic information for predominant microbes of the human body, such as bacteriophages, hinders our ability to answer fundamental questions about our viral communities. Here, we applied single-virus genomics (SVGs) to natural human salivary samp...

Journal: :The Journal of general virology 2010
Sanela Svraka Karyna Rosario Erwin Duizer Harrie van der Avoort Mya Breitbart Marion Koopmans

The use of metagenomics for virus discovery in clinical samples has opened new opportunities for understanding the aetiology of unexplained illness. This study explores the potential of this sequence-independent approach in a public-health setting, by systematic analysis of samples cultured from patients with unexplained illness through a combination of PCR-based assays and viral metagenomics. ...

Journal: :Biotechnology & genetic engineering reviews 2010
Ludmila Chistoserdovai

Metagenomics is a relatively new but fast growing field within environmental biology directed at obtaining knowledge on genomes of environmental microbes as well as of entire microbial communities. With the sequencing technologies improving steadily, generating large amounts of sequence is becoming routine. However, it remains difficult to connect specific microbial phyla to specific functions ...

Journal: :Microbiology and molecular biology reviews : MMBR 2004
Jo Handelsman

Metagenomics (also referred to as environmental and community genomics) is the genomic analysis of microorganisms by direct extraction and cloning of DNA from an assemblage of microorganisms. The development of metagenomics stemmed from the ineluctable evidence that as-yet-uncultured microorganisms represent the vast majority of organisms in most environments on earth. This evidence was derived...

Journal: :FEMS microbiology reviews 2009
José M Vieites María-Eugenia Guazzaroni Ana Beloqui Peter N Golyshin Manuel Ferrer

The world of microorganisms comprises a vast diversity of live organisms, each with its individual set of genes, cellular components and metabolic reactions that interact within the cell and communicate with the environment in many different ways. There is a strong imperative to gain a broader view of the wired and interconnected cellular and environmental processes as a whole via the systems m...

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