EDEN corrects for multiple testing, as in the protein group comparisons. Each window with a corrected significant P value (p <0.05 by default) and a mean gap ratio in this window lower than 60% (by default) is reported, where overlapping windows are merged into clusters. For each gene family, EDEN creates a visualization of the dN/dS ratio within the MSA (Fig. 1c). If groupings of samples are p...

The parallel functional language Eden uses explicit processes to export computations to other processor elements and to achieve parallelism. As Eden is based on the non-strict functional language Haskell, this raises the question in which way and to which degree the lazy evaluation strategy of Haskell should be transferred to the parallel setting. A modification is needed, as a completely deman...

The rules of “Bulgarian solitaire” are considered as an operation on the set of partitions to induce a finite dynamical system. We focus on partitions with no preimage under this operation, known as Garden of Eden points, and their relation to the partitions that are in cycles. These are the partitions of interest, as we show that starting from the Garden of Eden points leads through the entire...

BACKGROUND We conducted a clinical study that tested the effect of suppressive treatment with the botanical product Gene-Eden-VIR/Novirin on genital herpes. Our previous paper showed that the treatment decreased the number of genital herpes outbreaks without any side effects. It also showed that the clinical effects of Gene-Eden-VIR/Novirin are mostly better than those reported in the studies t...

Parallel programming generally requires awareness of the granularity and communication requirements of parallel subtasks, since without precaution, the overhead for parameter and result communication may outweigh the gain of parallel processing. While this problem is often solved explicitly at the language level, it can also be alleviated by optimising message passing mechanisms in the runtime ...

In this paper, we describe the handling of channel structures in Eden. Channel structures are crucial for achieving the exibility and compositionality that is one of the most important aims of Eden. We show alternative mechanisms for treating them and explain why it has been decided to admit the dynamic splitting of channel structures as a feature of the language. The modelling of this in the o...

We present a collection of skeletons that are appropriate to instantiate process systems in the functional-concurrent language Eden BLOM96]. Eden is a functional language providing facilities for the explicit deenition and instantiation of processes. Skeletons in this language are just higher order functions having process deenitions as parameters. We introduce skeletons for both transformation...

Eden is a concurrent declarative language that aims at both the programming of reactive systems and parallel algorithms on distributed memory systems. In this paper, we explain the computation and coordination model of Eden. We show how lazy evaluation in the computation language is fruitfully combined with the coordination language that is speciically designed for multicomputers and that aims ...

We study sequential colonies introduced in [5], [9] from the point of view of their environmental structures. We give expressions for the languages Life, Garden-of-Eden, Doomsday and Non-life and we present conditions for the emptiness of these languages for the sequential colonies with basic and terminal mode of the derivation. I{eywords: b mode colony, t mode colony, garden of Eden, life, doo...