UniPathway (http://www.unipathway.org) is a fully manually curated resource for the representation and annotation of metabolic pathways. UniPathway provides explicit representations of enzyme-catalyzed and spontaneous chemical reactions, as well as a hierarchical representation of metabolic pathways. This hierarchy uses linear subpathways as the basic building block for the assembly of larger a...

Image annotation datasets are becoming larger and larger, with tens of millions of images and tens of thousands of possible annotations. We propose a strongly performing method that scales to such datasets by simultaneously learning to optimize precision at the top of the ranked list of annotations for a given image and learning a lowdimensional joint embedding space for both images and annotat...

Deep Web data is encoded in HTML pages through query-processing, the structural information of database mode is completely lost. In addition, current query-results are only for human browsing. For a higher use value of query-results, they must be understandable and processable for machines. Deep Web semantic annotation aims to add correct semantic to query-results, which enables the computer un...

We report on the implementation of a morphological analyzer for the Sahidic dialect of Coptic, a now extinct Afro-Asiatic language. The system is developed in the finite-state paradigm. The main purpose of the project is provide a method by which scholars and linguists can semi-automatically gloss extant texts written in Sahidic. Since a complete lexicon containing all attested forms in differe...

UNLABELLED The Gene Ontology (GO) resource provides dynamic controlled vocabularies to provide an information-rich resource to aid in the consistent description of the functional attributes and subcellular locations of gene products from all taxonomic groups (www.geneontology.org). System-focused projects, such as the Renal and Cardiovascular GO Annotation Initiatives, aim to provide detailed G...

In this paper, we present a corpus annotated with dependency relationships in Japanese. It contains about 30 thousand sentences in various domains. Six domains in Balanced Corpus of Contemporary Written Japanese have part-of-speech and pronunciation annotation as well. Dictionary example sentences have pronunciation annotation and cover basic vocabulary in Japanese with English sentence equival...

Linked Open Data initiatives have made available a diversity of collections that domain experts have annotated with controlled vocabulary terms from ontologies. The challenge is to explore these rich and complex annotated datasets, together with the domain semantics captured within ontologies, to discover patterns of annotations across multiple concepts that may lead to potential discoveries. W...

The Gene Ontology (GO) is a controlled vocabulary used for annotation of genes. Assigning such terms to uncategorized genes is timeconsuming work, and a recurring task in biomedicine. The biomedical citations of the literature database MEDLINE are indexed with terms from the Medical Subject Headings (MeSH). We studied whether MeSH terms from gene-related MEDLINE entries could be translated to G...

The need for robust pronunciation annotation over out-of-vocabulary (OOV) words has been increasing with the development of an application that deals with proper nouns and brand-new words, such as Voice Search. In robust pronunciation annotation over OOV words, the alignment between graphemes and phonemes is vital data. For a many-to-many alignment algorithm between graphemes and phonemes, we d...

There is significant knowledge captured through annotations on the life sciences Web. In past research, we developed a methodology of support and confidence metrics from association rule mining, to mine the association bridge (of termlinks) between pairs of controlled vocabulary (CV) terms across two ontologies. Our (naive) approach did not exploit the following: implicit knowledge captured via...