نتایج جستجو برای: epitope prediction

تعداد نتایج: 271735  

Journal: :Journal of information processing 2021

Abstract B-cells inducing antigen-specific immune responses in vivo produce large amounts of antibodies by recognizing the subregions (epitope regions) antigen proteins. They can inhibit their functioning binding to Predicting epitope regions is beneficial for design and development vaccines aimed induce antibody production. However, prediction accuracy requires improvement. The conventional re...

Journal: :BIO web of conferences 2021

Infectious diseases have become part of human civilization as a constant phenomenon throughout time. The Human Immunodeficiency Virus (HIV) is virus that can cause immune system weakness by attacking cells CD4 receptors and CCR5 or CXCR4 chemokine coreceptors, namely helper T macrophages dendritic cells. Therefore, people infected with this will be vulnerable to opportunistic infections cancer....

2012
Masahiko Mori Kei Matsuki Tomoyuki Maekawa Mari Tanaka Busarawan Sriwanthana Masaru Yokoyama Koya Ariyoshi

INTRODUCTION Class I HLA's polymorphism has hampered CTL epitope mapping with laborious experiments. Objectives are 1) to evaluate the novel in silico model in predicting previously reported epitopes in comparison with existing program, and 2) to apply the model to predict optimal epitopes with HLA using experimental results. MATERIALS AND METHODS We have developed a novel in silico epitope p...

Journal: :Nucleic Acids Research 2005
Pedro A. Reche Ellis L. Reinherz

Prediction of peptide binding to major histocompatibility complex (MHC) molecules is a basis for anticipating T-cell epitopes, as well as epitope discovery-driven vaccine development. In the human, MHC molecules are known as human leukocyte antigens (HLAs) and are extremely polymorphic. HLA polymorphism is the basis of differential peptide binding, until now limiting the practical use of curren...

Journal: :Journal of molecular recognition : JMR 2007
Jason A Greenbaum Pernille Haste Andersen Martin Blythe Huynh-Hoa Bui Raul E Cachau James Crowe Matthew Davies A S Kolaskar Ole Lund Sherrie Morrison Brendan Mumey Yanay Ofran Jean-Luc Pellequer Clemencia Pinilla Julia V Ponomarenko G P S Raghava Marc H V van Regenmortel Erwin L Roggen Alessandro Sette Avner Schlessinger Johannes Sollner Martin Zand Bjoern Peters

A B-cell epitope is the three-dimensional structure within an antigen that can be bound to the variable region of an antibody. The prediction of B-cell epitopes is highly desirable for various immunological applications, but has presented a set of unique challenges to the bioinformatics and immunology communities. Improving the accuracy of B-cell epitope prediction methods depends on a communit...

2014
Salvador Eugenio C. Caoili

B-cell epitope prediction can enable novel pharmaceutical product development. However, a mechanistically framed consensus has yet to emerge on benchmarking such prediction, thus presenting an opportunity to establish standards of practice that circumvent epistemic inconsistencies of casting the epitope prediction task as a binary-classification problem. As an alternative to conventional dichot...

2012
Chun-Hung Su Nikhil R. Pal Ken-Li Lin I-Fang Chung

BACKGROUND Identification of amino acid propensities that are strong determinants of linear B-cell epitope is very important to enrich our knowledge about epitopes. This can also help to obtain better epitope prediction. Typical linear B-cell epitope prediction methods combine various propensities in different ways to improve prediction accuracies. However, fewer but better features may yield b...

2017
Ward Fleri Sinu Paul Sandeep Kumar Dhanda Swapnil Mahajan Xiaojun Xu Bjoern Peters Alessandro Sette

The task of epitope discovery and vaccine design is increasingly reliant on bioinformatics analytic tools and access to depositories of curated data relevant to immune reactions and specific pathogens. The Immune Epitope Database and Analysis Resource (IEDB) was indeed created to assist biomedical researchers in the development of new vaccines, diagnostics, and therapeutics. The Analysis Resour...

M. Tahmoorespur, N. Nazifi Z. Pirkhezranian

Protective antigen (PA), a subunit of anthrax toxin from Bacillus anthracis, is known as a dominant component in subunit vaccines in protection against anthrax. In order to avoid the side effects of live attenuated and killed organisms, the use of linear neutralizing epitopes of PA is recommended in order to design recombinant vaccines. The present study is aimed at determining the dominant epi...

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