We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the bi...

Using a fluorescence method called colocalization single-molecule spectroscopy (CoSMoS), Friedman and Gelles dissect the kinetics of transcription initiation at a bacterial promoter. Ultimately, CoSMoS could greatly aid the study of the effects of DNA sequence and transcription factors on both prokaryotic and eukaryotic promoters.

Most biological information is contained within gene and genome sequences. However, current methods for analyzing these data are limited primarily to the prediction of coding regions and identification of sequence similarities. We have developed a computer algorithm, CoSMoS (for context sensitive motif searches), which adds context sensitivity to sequence motif searches. CoSMoS was challenged t...

in order to determine the resistance levels and the most suitable potato genotypes to the early blight, an experiment was conducted in a completely randomized factorial design with three replications, in national plant gene bank of iran during 2007-2008. factors included pathogenic fungus, a. tenuissima and a. alternata and six potato genotypes, picasso, marfona, delta, agria, cosmos and armida...

Introduction: Quantitative Susceptibility Mapping (QSM) provides both visualization and quantification of endogenous and exogenous susceptibility contrast. Finding the susceptibility distribution from the measured field map requires a deconvolution of that field map with the unit dipole response, a process which is ill-posed [1]. Several techniques have been proposed to solve the problem by mul...