نتایج جستجو برای: triplex pcr

تعداد نتایج: 176355  

Journal: :Annual review of biochemistry 1995
M D Frank-Kamenetskii S M Mirkin

A DNA triplex is formed when pyrimidine or purine bases occupy the major groove of the DNA double Helix forming Hoogsteen pairs with purines of the Watson-Crick basepairs. Intermolecular triplexes are formed between triplex forming oligonucleotides (TFO) and target sequences on duplex DNA. Intramolecular triplexes are the major elements of H-DNAs, unusual DNA structures, which are formed in hom...

2012
Antonia S. Cardew Tom Brown Keith R. Fox

In order to enhance DNA triple helix stability synthetic oligonucleotides have been developed that bear amino groups on the sugar or base. One of the most effective of these is bis-amino-U (B), which possesses 5-propargylamino and 2'-aminoethoxy modifications. Inclusion of this modified nucleotide not only greatly enhances triplex stability, but also increases the affinity for related sequences...

Journal: :Journal of the American Chemical Society 2013
Wei Li Xi-Miao Hou Peng-Ye Wang Xu-Guang Xi Ming Li

Single-stranded guanine-rich sequences fold into compact G-quadruplexes. Although G-triplexes have been proposed and demonstrated as intermediates in the folding of G-quadruplexes, there is still a debate on their folding pathways. In this work, we employed magnetic tweezers to investigate the folding kinetics of single human telomeric G-quadruplexes in 100 mM Na(+) buffer. The results are cons...

2015
Tanmoy Mondal Santhilal Subhash Roshan Vaid Stefan Enroth Sireesha Uday Björn Reinius Sanhita Mitra Arif Mohammed Alva Rani James Emily Hoberg Aristidis Moustakas Ulf Gyllensten Steven J.M. Jones Claes M Gustafsson Andrew H Sims Fredrik Westerlund Eduardo Gorab Chandrasekhar Kanduri

Long noncoding RNAs (lncRNAs) regulate gene expression by association with chromatin, but how they target chromatin remains poorly understood. We have used chromatin RNA immunoprecipitation-coupled high-throughput sequencing to identify 276 lncRNAs enriched in repressive chromatin from breast cancer cells. Using one of the chromatin-interacting lncRNAs, MEG3, we explore the mechanisms by which ...

2013
Joanna Whitney Niek Beijerink Patricia Martin Jessica Talbot Vanessa Barrs

Hypersensitivity pneumonitis is a syndrome reported in humans, and occasionally animals, that results from the inhalation of very small antigenic particles (usually <5 µm) that are able to reach the alveolar space. This is the first report of hypersensitivity pneumonitis in a dog in Australia and the first associated with Geastrum triplex spores. Diagnosis was based on known antigen exposure, p...

Journal: :Genetic testing and molecular biomarkers 2013
Jianjie Zhu Lanxin Chen Yong Mao Huan Zhou Rui Li Weipeng Wang

Allele-specific amplification on the basis of polymerase chain reaction (PCR) has been widely used for single-nucleotide polymorphism (SNP) genotyping. However, the extraction of PCR-compatible genomic DNA from whole blood is usually required. This process is complicated and tedious, and is prone to cause cross-contamination between samples. To facilitate direct PCR amplification from whole blo...

Journal: :Clinical chemistry 2003
Marcy B Grace Christopher B McLeland Steven J Gagliardi Jeffrey M Smith William E Jackson William F Blakely

BACKGROUND High-throughput and forward-deployable biological dosimetry capabilities are required for tactical and medical decisions after radiologic events. We previously reported a quantitative reverse transcription (QRT)-PCR assay for human radiation-responsive gene targets using a whole-blood ex vivo irradiation model, but we needed a multitarget assay on a smaller, less costly, real-time PC...

Journal: :Nucleic acids research 1995
L Lavelle J R Fresco

Near-UV difference spectral analysis of the triplex formed from d(C-T)6 and d(A-G)6.d(C-T)6 in neutral and acidic solution shows that the third strand dC residues are protonated at pH 7.0, far above their intrinsic pKa. Additional support for ion-dipole interactions between the third strand dC residues and the G.C target base pairs comes from reduced positive dependence of triplet stability on ...

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