In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their contribution to overall phylogenetic diversity. However, in many cases evolution is not treelike and thus, phylogenetic networks have been develop...

I claim that an argument from the philosophy of statistics can be improved by using Carnapian inductive logic. \citet{GelmanShalizi2012} criticise a philosophical account of how statisticians ought to choose statistical models which they call `the received view of Bayesian inference' and propose a different account inspired by falsificationist philosophy of science. I introduce another philosop...

We provide in this chapter an overview of the basic steps to reconstruct evolutionary relationships through standard phylogeny estimation approaches as well as network approaches for sequences more closely related. We discuss the importance of sequence alignment, selecting models of evolution, and confidence assessment in phylogenetic inference. We also introduce the reader to a variety of soft...