نتایج جستجو برای: genomes
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Waxy proteins are responsible for amylase synthesis in wheat seeds, being encoded by three waxy genes (Wx-A1, Wx-B1 and Wx-D1) in hexaploid wheat which have an important role in starch quality. The purpose of this study was to investigate phylogenetic relationship between waxy genes in wild and cultivated wheat using Multiplex-PCR. To this end, 71 populations from 8 Aegilops and 4 wheat wild sp...
Phylogeny and genetic diversity of Amphioctopus fangsiao were assessed by sequence analysis of complete mitochondrial genomes, sequenced from 15 individuals of nine populations. The whole mtDNA genomes size were ranging from 15977 to 15990 bp. Data revealed 1642 polymorphic sites and 1023 parsimony informative sites. The phylogenetic analysis based on neighbor joining tree disclosed two clades...
SUMMARY A tool to predict the effect that newly discovered genomic variants have on known transcripts is indispensible in prioritizing and categorizing such variants. In Ensembl, a web-based tool (the SNP Effect Predictor) and API interface can now functionally annotate variants in all Ensembl and Ensembl Genomes supported species. AVAILABILITY The Ensembl SNP Effect Predictor can be accessed...
Advances in DNA sequencing technology over the past decade have increased the volume of raw sequenced genomic data available for further assembly and analysis. While there exist many algorithms for assembly of sequenced genomic material, they often experience difficulties in constructing complete genomic sequences. Instead, they produce long genomic subsequences (scaffolds), which then become a...
It has been suggested that the capacity to evolve can itself evolve. One factor that may be important in determining evolvability is modularity of the genotype-phenotype map. A related phenomenon is modularity in genome architecture, in which genes with epistatic effects are colocalized on the chromosome. This changes a population’s response to recombination by maximizing recombination among ge...
The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11,472 sequenc...
The Ensembl project (http://www.ensembl.org) is a comprehensive genome information system featuring an integrated set of genome annotation, databases, and other information for chordate, selected model organism and disease vector genomes. As of release 51 (November 2008), Ensembl fully supports 45 species, and three additional species have preliminary support. New species in the past year inclu...
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