We present the experience of the authors teaching mathematics to freshmen engineering students with the help of the open source computer algebra system Sage. We describe some teaching resources and present an ad hoc distribution of Sage used by the authors.

Greater sage-grouse (Centrocercus urophasianus) are dependent on sagebrush (Artemisia spp.) for food and shelter during winter, yet few studies have assessed winter habitat selection, particularly at scales applicable to conservation planning. Small changes to availability of winter habitats have caused drastic reductions in some sage-grouse populations. We modeled winter habitat selection by s...

Next-generation sequencing is excellently suited to evaluate the abundance of mRNAs to study gene expression. Here we compare two alternative technologies, cap analysis of gene expression (CAGE) and serial analysis of gene expression (SAGE), for the same RNA samples. Along with quantifying gene expression levels, CAGE can be used to identify tissue-specific transcription start sites, while SAGE...

Short-tooth sage (Salvia brachyodon Vandas) is an endemic and one of the rarest plant species of the Dinaric karst. Although older literature indicates its presence in more localities, only two have been confi rmed at the present time, Mt. Orjen (border of Bosnia and Herzegovina and Montenegro) and Pelješac peninsula (Croatia). Due to its very narrow distribution and economically very interesti...

—Anthropogenic noise can limit the ability of birds to communicate by masking their acoustic signals. Masking, which reduces the distance over which the signal can be perceived by a receiver, is frequency dependent, so the different notes of a single song may be masked to different degrees. We analyzed the individual notes of mating vocalizations produced by Greater Sage-Grouse (Centrocercus ur...

Analysis of several million expressed gene signatures (tags) revealed an increasing number of different sequences, largely exceeding that of annotated genes in mammalian genomes. Serial analysis of gene expression (SAGE) can reveal new Poly(A) RNAs transcribed from previously unrecognized chromosomal regions. However, conventional SAGE tags are too short to identify unambiguously unique sites i...

Serial Analysis of Gene Expression (SAGE) is a powerful expression profiling method, allowing the analysis of the expression of thousands of transcripts simultaneously. A disadvantage of the method, however, is the relatively high amount of input RNA required. Consequently, SAGE cannot be used for the generation of expression profiles when RNA is limited, i.e. in small biological samples such a...

This is a preliminary report on a project to characterize the historic species composition of coastal sage scrub vegetation in southern California using plot data collected between 1929 and 1934 by the USDA Forest Service's Vegetation Type Map (VTM) survey. Records and maps from a large historic data set collected for the VTM survey were converted into a digital database and GIS coverage. Histo...

This paper describes Sage, a software environment supporting software development, synthesis, and testing for distributed computing applications. While the principal domain of interest is applications that must be fault-tolerant (i.e., be able to withstand the failure of some of the participants) Sage is not limited to this; it can be extended to distributed applications with no criticality req...