نتایج جستجو برای: ribosome rescue

تعداد نتایج: 45218  

2013
Patrick B. F. O'Connor Gene-Wei Li Jonathan S. Weissman John F. Atkins Pavel V. Baranov

MOTIVATION Ribosome profiling is a new technique that allows monitoring locations of translating ribosomes on mRNA at a whole transcriptome level. A recent ribosome profiling study demonstrated that internal Shine-Dalgarno (SD) sequences have a major global effect on translation rates in bacteria: ribosomes pause at SD sites in mRNA. Therefore, it is important to understand how SD sites effect ...

Journal: :The Journal of Cell Biology 1997
Edwin C. Murphy Tianli Zheng Christopher V. Nicchitta

Protein translocation in the mammalian endoplasmic reticulum (ER) occurs cotranslationally and requires the binding of translationally active ribosomes to components of the ER membrane. Three candidate ribosome receptors, p180, p34, and Sec61p, have been identified in binding studies with inactive ribosomes, suggesting that ribosome binding is mediated through a receptor-ligand interaction. To ...

2013
Audrey M Michel Pavel V Baranov

Ribosome profiling or ribo-seq is a new technique that provides genome-wide information on protein synthesis (GWIPS) in vivo. It is based on the deep sequencing of ribosome protected mRNA fragments allowing the measurement of ribosome density along all RNA molecules present in the cell. At the same time, the high resolution of this technique allows detailed analysis of ribosome density on indiv...

Journal: :Genes & development 2004
Qiaoran Xi Rafael Cuesta Robert J Schneider

Although most mRNAs initiate translation by 5' ribosome scanning, some small fraction of mammalian and viral mRNAs utilize either of two alternate mechanisms, known as internal ribosome entry and ribosome shunting. Ribosome shunting is a poorly understood form of initiation in which 40S ribosome subunits are loaded onto mRNA through interactions with the m7GTP cap, but then bypass large segment...

Journal: :RNA 2009
Andreas Savelsbergh Marina V Rodnina Wolfgang Wintermeyer

Elongation factor G (EF-G) promotes the translocation step in bacterial protein synthesis and, together with ribosome recycling factor (RRF), the disassembly of the post-termination ribosome. Unlike translocation, ribosome disassembly strictly requires GTP hydrolysis by EF-G. Here we report that ribosome disassembly is strongly inhibited by vanadate, an analog of inorganic phosphate (Pi), indic...

Journal: :Journal of Cell Biology 2005

2014
Rebecca M. Voorhees Israel S. Fernández Sjors H.W. Scheres Ramanujan S. Hegde

Cotranslational protein translocation is a universally conserved process for secretory and membrane protein biosynthesis. Nascent polypeptides emerging from a translating ribosome are either transported across or inserted into the membrane via the ribosome-bound Sec61 channel. Here, we report structures of a mammalian ribosome-Sec61 complex in both idle and translating states, determined to 3.4...

Journal: :The EMBO journal 2006
Yoshimi Honma Aiko Kitamura Ryo Shioda Hironori Maruyama Kanako Ozaki Yoko Oda Thierry Mini Paul Jenö Yasushi Maki Kazuyoshi Yonezawa Ed Hurt Masaru Ueno Masahiro Uritani Michael N Hall Takashi Ushimaru

The protein kinase TOR (target of rapamycin) controls several steps of ribosome biogenesis, including gene expression of rRNA and ribosomal proteins, and processing of the 35S rRNA precursor, in the budding yeast Saccharomyces cerevisiae. Here we show that TOR also regulates late stages of ribosome maturation in the nucleoplasm via the nuclear GTP-binding protein Nog1. Nog1 formed a complex tha...

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