نتایج جستجو برای: n50

تعداد نتایج: 630  

2014
Yu-Juan Zhang Youjin Hao Fengling Si Shuang Ren Ganyu Hu Li Shen Bin Chen

The onion maggot Delia antiqua is a major insect pest of cultivated vegetables, especially the onion, and a good model to investigate the molecular mechanisms of diapause. To better understand the biology and diapause mechanism of the insect pest species, D. antiqua, the transcriptome was sequenced using Illumina paired-end sequencing technology. Approximately 54 million reads were obtained, tr...

2009
SUGARCANE FIELDS H. G. HARRIS

Three experiments on the control of nematodes in sugarcane fields are described and res+ults based on yield responses and nematode numbers are quoted. Meloidogyne practically disappeared when the grass, Erugrostis curvula was grown for three seasons, but increased when tomatoes and beans were groyn. Yield responses to nematocides in the absence of Meloidogyne show that this is not the only nema...

2017
Zachary R. Hanna James B. Henderson Jeffrey D. Wall Christopher A. Emerling Jérôme Fuchs Charles Runckel David P. Mindell Rauri C. K. Bowie Joseph L. DeRisi John P. Dumbacher

We report here the assembly of a northern spotted owl (Strix occidentalis caurina) genome. We generated Illumina paired-end sequence data at 90× coverage using nine libraries with insert lengths ranging from ∼250 to 9,600 nt and read lengths from 100 to 375 nt. The genome assembly is comprised of 8,108 scaffolds totaling 1.26 × 109 nt in length with an N50 length of 3.98 × 106 nt. We calculated...

2013
Qi Kuang Lingfei Li Jianzong Peng Shulan Sun Xiaojing Wang

In this study, the transcriptome of the Gerbera hybrida ray floret was constructed using a high-throughput Illumina sequencing platform. All 47,104 UniGenes with an average length of 845 nt and an N50 equaling 1321 nt were generated from 72,688,546 total primary reads after filtering and assembly. A total of 36,693 transcripts were annotated by comparison with non-redundant National Center for ...

2009
Genis Parra Keith Bradnam Zemin Ning Thomas Keane Ian Korf

Genome sequencing projects have been initiated for a wide range of eukaryotes. A few projects have reached completion, but most exist as draft assemblies. As one of the main reasons to sequence a genome is to obtain its catalog of genes, an important question is how complete or completable the catalog is in unfinished genomes. To answer this question, we have identified a set of core eukaryotic...

Journal: :Math. Program. 2004
Jens Lysgaard Adam N. Letchford Richard W. Eglese

We present a new branch-and-cut algorithm for the capacitated vehicle routing problem (CVRP). The algorithm uses a variety of cutting planes, including capacity, framed capacity, generalized capacity, strengthened comb, multistar, partial multistar, extended hypotour inequalities, and classical Gomory mixed-integer cuts. For each of these classes of inequalities we describe our separation algor...

2017
Steven J M Jones Gregory A Taylor Simon Chan René L Warren S Austin Hammond Steven Bilobram Gideon Mordecai Curtis A Suttle Kristina M Miller Angela Schulze Amy M Chan Samantha J Jones Kane Tse Irene Li Dorothy Cheung Karen L Mungall Caleb Choo Adrian Ally Noreen Dhalla Angela K Y Tam Armelle Troussard Heather Kirk Pawan Pandoh Daniel Paulino Robin J N Coope Andrew J Mungall Richard Moore Yongjun Zhao Inanc Birol Yussanne Ma Marco Marra Martin Haulena

The beluga whale is a cetacean that inhabits arctic and subarctic regions, and is the only living member of the genus Delphinapterus. The genome of the beluga whale was determined using DNA sequencing approaches that employed both microfluidic partitioning library and non-partitioned library construction. The former allowed for the construction of a highly contiguous assembly with a scaffold N5...

2010
János F. László Klára Gyires

The effect of inhomogeneous static magnetic field (SMF) on visceral pain elicited by the intraperitoneal injection of 0.6% acetic acid (writhing test) was studied in mice in an environment, where animals could freely move. 30 min, whole-body exposure of mice to SMF (permanent NdFeB N50 grade 10× 10mm cylindrical magnets with alternating poles) following the nociceptive challenge resulted in a 7...

Journal: :Frontiers in Plant Science 2023

Pennisetum alopecuroides is an important forage grass resource, which plays a vital role in ecological environment improvement. Therefore, the acquisition of P. genome resources conducive to study adaptability species remediation and breeding development. Here we assembled cv. 'Liqiu' at chromosome level with size approximately 845.71 Mb, contig N50 84.83Mb, integrity 99.13% as assessed by CEGM...

Journal: :Gene 2021

Mesua ferrea (Family: Calophyllaceae) is a tropical forest plant used for timber, biofuel, and traditional medicine. Colloquially, it known as Nagkesar (Cobra saffron) the state flower of Tripura (India). In this study, we perform whole-genome assembly using ~180X coverage paired-end Illumina data. Our de novo 614 Mega-base pair (Mbp), has an N50 392 Kilo-base pairs (Kbp), quality comparable to...

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