Thermodynamics constrains the flow of matter in a reaction network to occur through routes along which the Gibbs energy decreases, implying that viable steady-state flux patterns should be void of closed reaction cycles. Identifying and removing cycles in large reaction networks can unfortunately be a highly challenging task from a computational viewpoint. We propose here a method that accompli...

A radar-based climatology of 91 unique summertime (May 2000–August 2009) thunderstorm cases was examined over the Indianapolis, Indiana, urban area. The study hypothesis is that urban regions alter the intensity and composition/structure of approaching thunderstorms because of land surface heterogeneity. Storm characteristics were studied over the Indianapolis region and four peripheral rural c...

The quantitative analysis of biochemical reactions and metabolites is at frontier of biological sciences. The recent availability of high-throughput technology data sets in biology has paved the way for new modelling approaches at various levels of complexity including the metabolome of a cell or an organism. Understanding the metabolism of a single cell and multi-cell organism will provide the...

The constraint-based reconstruction and analysis (COBRA) framework has been widely used to study steady-state flux solutions in genome-scale metabolic networks. One shortcoming of current COBRA methods is the possible violation of the loop law in the computed steady-state flux solutions. The loop law is analogous to Kirchhoff's second law for electric circuits, and states that at steady state t...

Recent developments suggest that predictive modeling could begin to play a larger role not only for data analysis, but also for data collection. We address the example of efficient wireless sensor networks, where inferential ecosystem models can be used to weigh the value of an observation against the cost of data collection. Transmission costs make observations "expensive"; networks will typic...

Accurate modeling of the energy balance of a snowpack requires good estimates of the snow surface temperature. The snow surface temperature allows a balance between atmospheric heat fluxes and the conductive flux into the snowpack. While the dependency of atmospheric fluxes on surface temperature is reasonably well understood and parameterized, conduction of heat from the snow surface into the ...

The numerical modelling and process simulation for the fault diagnosis of rotary kiln incinerator were accomplished. In the numerical modelling, two models applied to the modelling within the kiln are the combustion chamber model including the mass and energy balance equations for two combustion chambers and 3D thermal model. The combustion chamber model predicts temperature within the kiln, fl...