نتایج جستجو برای: families

تعداد نتایج: 123362  

2014
Ljubomir Buturovic Mike Wong Grace W. Tang Russ B. Altman Dragutin Petkovic

We address the problem of assigning biological function to solved protein structures. Computational tools play a critical role in identifying potential active sites and informing screening decisions for further lab analysis. A critical parameter in the practical application of computational methods is the precision, or positive predictive value. Precision measures the level of confidence the us...

2013
Chuan-Ching Huang Chuan Yi Tang

Severe gastroenteritis and foodborne illness caused by Noroviruses (NoVs) during the winter are a worldwide phenomenon. Vulnerable populations including young children and elderly and immunocompromised people often require hospitalization and may die. However, no efficient vaccine for NoVs exists because of their variable genome sequences. This study investigates the infection processes in prot...

2005
Mark Duggan Melissa Schettini Kearney Melissa Schettini

Between 1989 and 2005 the number of children receiving disability benefits from the Supplemental Security Income (SSI) program in the U.S. increased from 0.26 million to 1.03 million. We utilize longitudinal data from the Survey of Income and Program Participation (SIPP) to estimate the effect of child SSI enrollment on total household income and the separate components of income, including ear...

2007
James P. Ziliak

In the 1990s, many states liberalized statutory rules regarding the tax treatment of earned and unearned income for welfare program eligibility and benefit levels. I use quality control data from the AFDC/TANF program over 1983–2002 to document changes in the corresponding effective tax rates and benefit guarantees. After welfare reform I find that effective tax rates fell by 50 percent on earn...

Journal: :Methods in molecular biology 2009
Umar Syed Golan Yona

Enzymes play central roles in metabolic pathways, and the prediction of metabolic pathways in newly sequenced genomes usually starts with the assignment of genes to enzymatic reactions. However, genes with similar catalytic activity are not necessarily similar in sequence, and therefore the traditional sequence similarity-based approach often fails to identify the relevant enzymes, thus hinderi...

2010
Constantina Bakolitsa Abhinav Kumar Daniel McMullan S. Sri Krishna Mitchell D. Miller Dennis Carlton Rafael Najmanovich Polat Abdubek Tamara Astakhova Hsiu-Ju Chiu Thomas Clayton Marc C. Deller Lian Duan Ylva Elias Julie Feuerhelm Joanna C. Grant Slawomir K. Grzechnik Gye Won Han Lukasz Jaroszewski Kevin K. Jin Heath E. Klock Mark W. Knuth Piotr Kozbial David Marciano Andrew T. Morse Edward Nigoghossian Linda Okach Silvya Oommachen Jessica Paulsen Ron Reyes Christopher L. Rife Christina V. Trout Henry van den Bedem Dana Weekes Aprilfawn White Qingping Xu Keith O. Hodgson John Wooley Marc-André Elsliger Ashley M. Deacon Adam Godzik Scott A. Lesley Ian A. Wilson

The crystal structure of PA1994 from Pseudomonas aeruginosa, a member of the Pfam PF06475 family classified as a domain of unknown function (DUF1089), reveals a novel fold comprising a 15-stranded β-sheet wrapped around a single α-helix that assembles into a tight dimeric arrangement. The remote structural similarity to lipoprotein localization factors, in addition to the presence of an acidic ...

2007
JOHN A. KNOWLES

Look at the dramatic change in family structure that has occurred recently, illustrated in Figure 1. In the United States, 23 percent of children lived with an unwed mother in 1998, compared with only 8 percent in 1960.1 Of this 15-percentage-point increase, about 6 percentage points are due to a rise in the rate of divorce; the remaining 9 percentage points arise from an increase in out-of-wed...

Journal: :Yeast (Chichester, England) 2000
Christopher Southan

The family and motif databases, PROSITE, PRINTS, Pfam and ProDom, have been integrated into a powerful resource for protein secondary annotation. As of June 2000, InterPro had processed 384 572 proteins in SWISS-PROT and TrEMBL. Because the contributing databases have different clustering principles and scoring sensitivities, the combined assignments compliment each other for grouping protein f...

Journal: :Nucleic Acids Research 2005
Michael Hiller Klaus Huse Matthias Platzer Rolf Backofen

Most of the known alternative splice events have been detected by the comparison of expressed sequence tags (ESTs) and cDNAs. However, not all splice events are represented in EST databases since ESTs have several biases. Therefore, non-EST based approaches are needed to extend our view of a transcriptome. Here, we describe a novel method for the ab initio prediction of alternative splice event...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2002
Dong Hae Shin Hisao Yokota Rosalind Kim Sung-Hou Kim

The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined by using x-ray crystallography. The protein belongs to the domain of unknown function DUF28 in the Pfam and PALI databases for which there was no structural information available until now. A structural homology search with the DALI algorithm indicates that this protein has a new fold wi...

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