Portions of the 12S and 16S mitochondrial ribosomal genes for 16 species representing nine tribes in the mammal family Bovidae were compared with six previously published orthologous sequences. Phylogenetic analysis of variable nucleotide positions under different constraints and weighting schemes revealed no robust groupings among tribes. Consensus trees support previous hypotheses of monophyl...

New combinations and names are here validated for ten grass (Poaceae) taxa in California for the forthcoming revision of The Jepson Manual. In addition, guided by recent molecular phylogenetic studies, ten non-California grass species are here transferred to Muhlenbergia (Chloridoideae: Cynodonteae) to achieve monophyly of the genus. Lolium, long known to be phylogenetically nested within Festu...

Some generally accepted viewpoints on the phylogenetic relationships within the molluscan class Gastropoda are reassessed by comparing complete 18S rRNA sequences. Phylogenetic analyses were performed using the neighbor-joining and maximum parsimony methods. The previously suggested basal position of Archaeogastropoda, including Neritimorpha and Vetigastropoda, in the gastropod clade is confirm...

To investigate the phylogenetic relationships of leeches, branchiobdellidans, and acanthobdellidans, whole nuclear 18S rDNA and over 650 bp of mitochondrial cytochrome c oxidase subunit I were acquired from 101 annelids, including 36 leeches, 18 branchiobdellidans, Acanthobdella peledina, as well as 28 oligochaetes and combined with homologous data for 17 polychaete outgroup taxa. Parsimony ana...

This study examines amphipod phylogeny based on small subunit (18S) rDNA sequence data. Complete sequences of 25 species representing six families were used to test the phylogenetic information content of this gene for reconstruction of amphipod phylogeny. The alignment proved to be informative for most of the studied taxa. The monophyly of the families Gammaridae, Crangonyctidae, Niphargidae a...

SYNOPSIS. To investigate jaw evolution in beloniform fishes, we reconstructed the phylogeny of 54 species using fragments of two nuclear (RAG2 and Tmo-4C4) and two mitochondrial (cytochrome b and 16S rRNA) genes. Our total molecular evidence topology refutes the monophyly of needlefishes (Belonidae) and halfbeaks (Hemiramphidae), but supports the monophyly of flyingfishes (Exocoetidae) and saur...

The monophyletic genus Chinavia Orian includes 80 species of which 18 are endemic to Brazil. The general morphology of the species allows the recognition of different groups of species, however, the monophyly and the phylogenetic relationships of those groups has not been investigated. We present here the first cladistic analysis involving species of Chinavia, with particular focus on the obsti...

The genus Oryzomys comprises 40 species arranged in several species groups. To test the monophyly of three Oryzomys species groups ("capito," nitidus, and subflavus), we analyzed, by distance, parsimony, and maximum-likelihood (ML), 801 bp of the mitochondrial gene cytochrome b. Our results did not sustain the monophyly of Oryzomys nor of the nitidus and subflavus species groups. Within the "ca...

Although recent multigene phylogenetic analyses support close relationship of Metazoa and Fungi (the eukaryotic supergroup Opisthokonta) and monophyly of eukaryotes with the primary plastid, that is, Chloroplastida, Rhodophyta, and Glaucophyta (the supergroup Archaeplastida or Plantae), some authors still challenge this scheme. I found that 2 particular types of guanine nucleotide exchange fact...

Complete nucleotide sequences from the mitochondrial cytochrome b gene (1143 bp) were used to investigate the phylogenetic relationships among the native rodents of Madagascar. Specifically, this study examines whether the nine genera of nesomyines form a monophyletic group relative to other Old World murids. All nine of the nesomyine genera, including multiple individuals from 15 of the 21 des...