A selective trans-packaging system was developed to produce and isolate bovine viral diarrhea virus (BVDV) pseudo-particles with complementing reporter replicons and their packaging proteins expressed in trans with recombinant vaccinia virus. The encapsidation of replicon rNS3-5B was dependent not only on the in trans expression of structural proteins C, E(rns), E1 and E2, but also the nonstruc...

Mutating RNA virus genomes to alter codon pair (CP) frequencies and reduce translation efficiency has been advocated as a method to generate safe, attenuated virus vaccines. However, selection for disfavoured CPs leads to unintended increases in CpG and UpA dinucleotide frequencies that also attenuate replication. We designed and phenotypically characterised mutants of the picornavirus, echovir...

Idle computation cycles of a shared network of workstations are increasingly being used to run batch parallel programs. For one common paradigm, the batch program task running on an idle workstation is preempted when the owner reclaims the workstation. This owner interference has a considerable impact on the execution time of a batch program, especially in the case of large parallel programs. R...

Reliability is one of the major challenges for high performance computing and cloud computing. Data replication is a commonly used mechanism to achieve high reliability. Unfortunately, it has a low storage efficiency among other shortcomings. As an alternative to data replication, information dispersal algorithms offer higher storage efficiency, but at the cost of being too computing-intensive ...

5-methylcytosine (5-mC) can be sequentially oxidized to 5-hydroxymethylcytosine (5-hmC), 5-formylcytosine (5-foC), and finally to 5-carboxylcytosine (5-caC), which is thought to function in active DNA cytosine demethylation in mammals. Although the roles of 5-mC in epigenetic regulation of gene expression are well established, the effects of 5-hmC, 5-foC and 5-caC on DNA replication remain uncl...

The two DNA strands of the nuclear genome are replicated asymmetrically using three DNA polymerases, α, δ, and ε. Current evidence suggests that DNA polymerase ε (Pol ε) is the primary leading strand replicase, whereas Pols α and δ primarily perform lagging strand replication. The fact that these polymerases differ in fidelity and error specificity is interesting in light of the fact that the s...

The dose-response relationship of the ionophore tetronasin was defined in growing-finishing cattle (84 heifers and 84 steers). Cattle were allotted by sex and weight replication (light and heavy) to 24 pens. Six dosages (D) of tetronasin (0, 3.7, 7.3, 11.0, 14.7 and 18.3 mg/kg, dry matter [DM] basis) were fed. Diets containing 40, 25 and 10% roughage were fed for 84, 56 and either 56 (heavy rep...

We describe the use of a series of gradually expanded thymine nucleobase analogs in probing steric effects in DNA polymerase efficiency and fidelity. In these nonpolar compounds, the base size was increased incrementally over a 1.0-A range by use of variably sized atoms (H, F, Cl, Br, and I) to replace the oxygen molecules of thymine. Kinetics studies with DNA Pol I (Klenow fragment, exonucleas...

Self-replicating probes are spacecraft with the capacity to create copies of themselves. Self-replication would potentially allow for an exponential increase in number and thereby drastically improve efficiency space exploration. Despite this potential, integrated assessment self-replicating has not been presented since 1980s, it is still unclear how far they feasible. In paper, we propose a co...

We have identified five autonomously replicating sequences (ARSs) in a 100 kbp region of the Schizosaccharomyces pombe chromosome II. Analyses of replicative intermediates of the chromosome DNA by neutral/neutral two-dimensional gel electrophoresis demonstrated that at least three of these ARS loci operate as chromosomal replication origins. One of the loci,ori2004, was utilized in almost every...