genetic variation of informative short tandem repeat (str) loci in an iranian population

Authors

reyhaneh lahmi

sadeq vallian

abstract

in the present study, genotyping of six short tandem repeat (str) loci including csf1po, d16s539, f13a01, f13b, lpl and hprtb was performed on genomic dna from 127 unrelated individuals from the iranian province of isfahan. the results indicated that the allele and genotype distributions were in accordance with hardy-weinberg expectations. the observed heterozygosity (ho), expected heterozygosity (he) as well as forensic and paternity indices including power of discrimination (pd) and exclusion (pe), polymorphism information content (pic), typical paternity index (pitypical) and probability of paternity (w) were determined for the examined str alleles. in addition, genetic diversity index (gd) and population parameter (θ) were calculated for the six loci. the combined power of discrimination (pdcombined) and combined probability of exclusion (petypical) were 0.9999998 and 0.999856 over the six loci, respectively. together, the examined str loci in this study have proven a relatively high genetic variation in iranian population. the data could be used for construction of a forensic genetic database for iranian population.

Upgrade to premium to download articles

Sign up to access the full text

Already have an account?login

similar resources

Genetic Variation of Informative Short Tandem Repeat (STR) Loci in an Iranian Population

In the present study, genotyping of six short tandem repeat (STR) loci including CSF1PO, D16S539, F13A01, F13B, LPL and HPRTB was performed on genomic DNA from 127 unrelated individuals from the Iranian province of Isfahan. The results indicated that the allele and genotype distributions were in accordance with Hardy-Weinberg expectations. The observed heterozygosity (Ho), expected heterozygosi...

full text

Allelic distribution of nine short tandem repeat (STR), HLA-DQA1, and polymarker loci in an Omani sample population.

Allele frequency distributions of nine short tandem repeat (STR) loci, D3S1358, vWA, FGA, D8S1179, D21S11, D18S51, D5S818, D7S820, and D13S317, HLA-DQA1 and polymarker (PM) loci were studied in a sample population from Sultanate of Oman, Middle East. Blood samples were collected from 162 unrelated individuals. For all STR, HLA-DQA1 and PM loci, no deviations from Hardy-Weinberg equilibrium, bas...

full text

African Jordanian population genetic database on fifteen short tandem repeat genetic loci.

AIM To establish a genetic database of the African-Jordanian population for forensic and paternity testing purposes. METHOD Allelic distribution at fifteen short tandem repeat (STR) loci was determined for 95 healthy unrelated African-Jordanians. The 15 autosomal STR loci, included within the GenePrint PowerPlex 16 system, were amplified from the subset of the 95 DNA extracts isolated from th...

full text

Genetic analysis of two STR loci (VWA and TPOX) in the Iranian province of Khuzestan

Objective(s): Short tandem repeat (STR) loci are the most informative DNA genetic markers for attempting to individualize biological material for application in paternity and forensic cases. Materials and Methods: Blood samples were collected and the total genomic DNA was extracted. The DNA samples were used for genotyping VWA and TPOX STR loci using PCR and polyacrylamide gel electrophoresis. ...

full text

Genetic polymorphisms of 17 Y-chromosomal short tandem repeat loci in Atayal population of Taiwan.

AIM To define the Y-chromosomal genetic structure in a sample of Atayal men from Taiwan. METHODS Buccal swab samples were collected from 170 unrelated healthy male volunteers from Taiwanese aboriginal Atayal population. Genomic DNA was extracted and 17 Y chromosome-specific short tandem repeat loci (DYS456, DYS389I, DYS390, DYS389II, DYS458, DYS19, DYS385a/b, DYS393, DYS391, DYS439, DYS635, D...

full text

Population genetic study of 10 short tandem repeat loci from 600 domestic dogs in Korea

Dogs have long shared close relationships with many humans. Due to the large number of dogs in human populations, they are often involved in crimes. Occasionally, canine biological evidence such as saliva, bloodstains and hairs can be found at crime scenes. Accordingly, canine DNA can be used as forensic evidence. The use of short tandem repeat (STR) loci from biological evidence is valuable fo...

full text

My Resources

Save resource for easier access later


Journal title:
iranian journal of biotechnology

Publisher: national institute of genetic engineering and biotechnology

ISSN 1728-3043

volume 7

issue 3 2009

Hosted on Doprax cloud platform doprax.com

copyright © 2015-2023