ab initio study of vinblastine-tubulin anticancer complex
Authors
abstract
vinblastine is an important anticancer agent known to diminish microtubule assembly. ab initio calculations are applied to examine the structural properties and different energies of vinblastine-tubulin complex in different dielectric constants and temperatures. the aims of this work are discovery the best optimized structure and thermodynamic properties of vinblastine-tubulin complex and comparing the structure of the complex under in and out of in vivo conditions. discovery dipole moment, frequency and intensity of vibration of the vinblastine-tubulin complex in different dielectric constants, finding free energy, enthalpy and entropy in different media that have been prepared in this paper could be useful in undrestanding the structural and thermodynamic properties of the complex. results show the structure is more stable in water than the other media. the dipole moment of the structure at dielectric constant of 24.55 is larger than that in the other media. the intensity of vibration of the structure decreases by decreasing dielectric constant. enthalpy and entropy energies have direct relationship with temperature. in vivo condition changes the structure and increases the affinity of vinblastine to tubulin. to confirm the reliability of the obtained data, the parameters were calculated by two methods, hartree-fock (hf) and becke, three-parameter, lee-yang-parr (b3lyp). the results indicated that the acquired data from these two methods are in good agreement.
similar resources
Ab Initio Study of Vinblastine-Tubulin Anticancer Complex
Vinblastine is an important anticancer agent known to diminish microtubule assembly. Ab initio calculations are applied to examine the structural properties and different energies of vinblastine-tubulin complex in different dielectric constants and temperatures. The aims of this work are discovery the best optimized structure and thermodynamic properties of vinblastine-tubulin complex ...
full textAb initio study of silver niobate
Using DFT calculations, we investigate the local structure and the distortion patterns of the perovskite AgNbO3 to examine the feasibility of using silver on the perovskite A-site in lead-free piezoelectrics. Our calculations show that in a 5-atom AgNbO 3 unit cell, silver atoms can off-center by about 0.5 A, forming short covalent bonds similar to the short Pb-O bonds in Pb-based ferrroelectri...
full textAb Initio Study of Ideal Shear Strength
Ideal strength, which can be defined as the stress necessary to induce permanent deformation in a material without prior imperfections, is one of the important materials characterizations. In this study we calculate the ideal pure shear and simple shear strengths of fcc (Al, Cu, Ni, Ag) and bcc (Fe, Mo, W) metals in their common slip systems using density functional theory. We find the critical...
full textAb initio study of BaTiO 3 surfaces
We have carried out first-principles total-energy calculations of ~001! surfaces of the tetragonal and cubic phases of BaTiO3. Both BaO-terminated ~type I! and TiO2-terminated ~type II! surfaces are considered, and the atomic configurations have been fully relaxed. We found no deep-gap surface states for any of the surfaces, in agreement with previous theoretical studies. However, the gap is re...
full textAb-initio study of SrTiO3 surfaces
We present rst-principles total-energy calculations of (001) surfaces of SrTiO 3. Both SrO-terminated and TiO 2-terminated surfaces are considered, and the results are compared with previous calculations for BaTiO 3 surfaces. The major diierences are in the details of the relaxed surface structures. Our calculations argue against the existence of a large ferroelectric relaxation in the surface ...
full textAb initio study on copper ferrite
The impact of cation distribution on electronic structure and magnetic properties is investigated by the first-principle calculation. The structure optimization is based on generalized gradient approximation GGA exchange-correlation and projector augmented wave method. The optimized structures of inverse and normal copper ferrite are tetragonal c /a=1.06 and cubic, respectively. The optimized s...
full textMy Resources
Save resource for easier access later
Journal title:
biomacromolecular journalPublisher: iran society of biophysical chemistry (isobc)
ISSN
volume 1
issue 1 2015
Keywords
Hosted on Doprax cloud platform doprax.com
copyright © 2015-2023