The evolution of supertrees.
نویسنده
چکیده
Supertrees result from combining many smaller, overlapping phylogenetic trees into a single, more comprehensive tree. As such, supertree construction is probably as old as the field of systematics itself, and remains our only way of visualizing the Tree of Life as a whole. Over the past decade, supertree construction has gained a more formal, objective footing, and has become an area of active theoretical and practical research. Here, I review the history of the supertree approach, focusing mainly on its current implementation. The supertrees of today represent some of the largest, complete phylogenies available for many groups, but are not without their critics. I conclude by arguing that the ever-growing molecular revolution will result in supertree construction taking on a new role and implementation in the future for analyzing large DNA sequence matrices as part of a divide-and-conquer phylogenetic approach.
منابع مشابه
Performance of flip supertree construction with a heuristic algorithm.
Supertree methods are used to assemble separate phylogenetic trees with shared taxa into larger trees (supertrees) in an effort to construct more comprehensive phylogenetic hypotheses. In spite of much recent interest in supertrees, there are still few methods for supertree construction. The flip supertree problem is an error correction approach that seeks to find a minimum number of changes (f...
متن کاملRECONSTRUCTING DIVERGENCE TIMES FOR SUPERTREES A molecular approach
Here, we present a formal approach to estimating divergence dates derived from aligned DNA sequence data on MRP supertrees, using a new supertree for the Primates as a case study. We selected 40 sequence data sets that conform under various models of sequence evolution to the molecular clock. Each of these data sets covers only a subset of the taxa on the supertree, and so composite date estima...
متن کاملMeta-trees: grafting for a global perspective
—Assembling phylogenetic trees for groups of organisms with thousands of taxa is problematic because of the large amount of data and trees that must be generated and analyzed. Several attempts have been made to develop a better way to handle the problems of large trees. Meta-trees (Meta Supertrees) are suggested as a way to generate a phylogeny for groups where you have many different data sets...
متن کاملSupertrees disentangle the chimerical origin of eukaryotic genomes.
Eukaryotes are traditionally considered to be one of the three natural divisions of the tree of life and the sister group of the Archaebacteria. However, eukaryotic genomes are replete with genes of eubacterial ancestry, and more than 20 mutually incompatible hypotheses have been proposed to account for eukaryote origins. Here we test the predictions of these hypotheses using a novel supertree-...
متن کاملBad Clade Deletion Supertrees: A Fast and Accurate Supertree Algorithm
Supertree methods merge a set of overlapping phylogenetic trees into a supertree containing all taxa of the input trees. The challenge in supertree reconstruction is the way of dealing with conflicting information in the input trees. Many different algorithms for different objective functions have been suggested to resolve these conflicts. In particular, there exist methods based on encoding th...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Trends in ecology & evolution
دوره 19 6 شماره
صفحات -
تاریخ انتشار 2004