PorcineSNP60 v2 Genotyping BeadChip
ثبت نشده
چکیده
Introduction The PorcineSNP60 v2 BeadChip (Figure 1) is the most comprehensive genome-wide genotyping array for the porcine genome, providing superior power to interrogate genetic variation across many porcine breeds, including Duroc, Landrace, Pietrain, and Large White. The PorcineSNP60 BeadChip was developed in collaboration with the International Porcine SNP Chip Consortium, comprising researchers from Wageningen University, Danish Institute of Agricultural Science, USDA-ARS, USMARC, Roslin Institute, University of Illinois, Iowa State University, INRA, University of Missouri, and Cambridge University.
منابع مشابه
Comparison of different DNA extraction methods from hair root follicles to genotype Finnish Landrace boars with the Illumina PorcineSNP60 BeadChip
Recent developments in sequencing methods have enabled whole genome sequencing of several species and the available sequence information has allowed the development of high throughput genotyping chips. However, these genotyping methods require high quality DNA. The possibility to genotype samples based on DNA from non-invasive sources would permit retrospective genotyping of previously collecte...
متن کاملDesign of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology
BACKGROUND The dissection of complex traits of economic importance to the pig industry requires the availability of a significant number of genetic markers, such as single nucleotide polymorphisms (SNPs). This study was conducted to discover several hundreds of thousands of porcine SNPs using next generation sequencing technologies and use these SNPs, as well as others from different public sou...
متن کاملGenome-Wide Copy Number Variations Using SNP Genotyping in a Mixed Breed Swine Population
Copy number variations (CNVs) are increasingly understood to affect phenotypic variation. This study uses SNP genotyping of trios of mixed breed swine to add to the catalog of known genotypic variation in an important agricultural animal. PorcineSNP60 BeadChip genotypes were collected from 1802 pigs that combined to form 1621 trios. These trios were from the crosses of 50 boars with 525 sows pr...
متن کاملReduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness
The aim of this study was to identify single nucleotide polymorphisms (SNPs) that could be associated with back fat thickness (BFT) in pigs. To achieve this goal, we evaluated the potential and limits of an experimental design that combined several methodologies. DNA samples from two groups of Italian Large White pigs with divergent estimating breeding value (EBV) for BFT were separately pooled...
متن کاملWhole-genome genotyping of haplotype tag single nucleotide polymorphisms.
The International HapMap Consortium recently completed genotyping over 3.8 million single nucleotide polymorphisms (SNPs) in three major populations, and the results of studying patterns of linkage disequilibrium indicate that characterization of 300,000-500,000 tag SNPs is sufficient to provide good genomic coverage for linkage-disequilibrium-based association studies in many populations. Thes...
متن کامل