From Stochastic Nonlinear Integrate-and-Fire to Generalized Linear Models
نویسندگان
چکیده
Variability in single neuron models is typically implemented either by a stochastic Leaky-Integrate-and-Fire model or by a model of the Generalized Linear Model (GLM) family. We use analytical and numerical methods to relate state-of-theart models from both schools of thought. First we find the analytical expressions relating the subthreshold voltage from the Adaptive Exponential Integrate-andFire model (AdEx) to the Spike-Response Model with escape noise (SRM as an example of a GLM). Then we calculate numerically the link-function that provides the firing probability given a deterministic membrane potential. We find a mathematical expression for this link-function and test the ability of the GLM to predict the firing probability of a neuron receiving complex stimulation. Comparing the prediction performance of various link-functions, we find that a GLM with an exponential link-function provides an excellent approximation to the Adaptive Exponential Integrate-and-Fire with colored-noise input. These results help to understand the relationship between the different approaches to stochastic neuron models.
منابع مشابه
Firing-rate response of linear and nonlinear integrate-and-fire neurons to modulated current-based and conductance-based synaptic drive.
Integrate-and-fire models are mainstays of the study of single-neuron response properties and emergent states of recurrent networks of spiking neurons. They also provide an analytical base for perturbative approaches that treat important biological details, such as synaptic filtering, synaptic conductance increase, and voltage-activated currents. Steady-state firing rates of both linear and non...
متن کاملBiophysical vs reduced rate models for predicting retinal ganglion cell spike trains
Retinal ganglion cells (RGCs) respond to spatiotemporal patterns falling on photoreceptors by firing spike trains with an exquisitely precise temporal structure. Existing models of RGCs are reduced input-output models of light intensity or other features (eg contrast), but contain no biophysical parameters for a single RGC. These models, such as the stochastic integrate and fire (IF) and linear...
متن کاملTowards a Unified Model for the Retina - Static vs Dynamic Integrate and Fire Models
Many models have been proposed to describe the visual processing mechanisms in the retina. The spike generation mechanism of the models is typically performed by a Poisson process. Alternatively, a more realistic approach can be used by implementing an integrate and fire mechanism. In this paper we show that the Stochastic Leaky Integrate and Fire (SLIF) model is equivalent to a non-linear Pois...
متن کاملInvestigating Correlation Properties of Hodgkin- Huxley Model with Leaky Integrate–and-Fire Model
Behavioral study of linear model i.e. Integrate and fire model is compared with non-linear model i.e. Hodgkin-Huxley model. Both the models output are affected by Poisson inputs that are correlated positively. Responses of Integrate and fire model and Hodgkin-Huxley models differ in terms of correlated inputs. Linear Integrate and fire model is better for correlated inputs. Non-Linear model dis...
متن کاملComputing likelihoods in the stochastic integrate-and-fire model: numerical methods
Recent work has examined the estimation of models of stimulus-driven neural activity in which a linear filtering process is followed by a nonlinear, probabilistic spiking stage. We analyze the estimation of one such model for which this nonlinear step is implemented by a noisy, leaky, integrate-and-fire mechanism with a spike-dependent after-current. We have formulated this problem in terms of ...
متن کامل