Predicting shielding constants in solution using gauge invariant atomic orbital theory and the effective fragment potential method.

نویسندگان

  • Mark A Freitag
  • Brandon Hillman
  • Anubhav Agrawal
  • Mark S Gordon
چکیده

A method to approximate ab initio shielding constants is presented, in which the ab initio density matrix is replaced in the gauge invariant atomic orbital formalism with the density matrix resulting from an effective fragment potential calculation. The resulting first-order density matrix is then iterated to self-consistency. The method is compared with fully ab initio gauge invariant atomic orbital restricted Hartree-Fock calculations on hydrogen chloride, water, and ammonia solutes with up to nine solvent water molecules using the 6-31G, 6-31G(d,p), and 6-31+G(d,p) basis sets. Using the 6-31G(d,p) basis sets, the average of the average absolute deviations for the three environments tested is 0.34 ppm. This is sufficiently accurate to allow for the identification of specific (1)H nuclei in a solvated molecule when the chemical shift between nuclei is not less than 1 ppm. The success of the method at this level of approximation is due to a cancellation of errors between the paramagnetic and diamagnetic terms of the shielding constant: the diamagnetic term is underestimated by roughly the same amount that the paramagnetic term is overestimated.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

An Ab initio and chemical shielding tensors calculations for Nucleotide 5’-Monophosphates in the Gas phase

Structural and magnetic properties of purine and pyrimidine nucleotides (CMP, UMP, dTMP, AMP, GMP, IMP) were studied at different levels of ab initio molecular orbital theory. These calculations were performed at the hartree-fock level and density functional B3LYP methods. Geometries were fully optimized by following Cs symmetry restrictions. The standard 6-31G** basis set which includes polari...

متن کامل

An ab initio study of metalated CMP,UMP& dTMP at HF level:Bond energies and isotropic NMR shielding of atoms

The interaction of Magnesium hydrate at the phosphate oxygen atom of the pyrimidine nucleotides (CMP,UMP,dTMP) were studied at the Hartree-Fock level Theory. We used LANL2DZ basis set for Mg and 6-31g* basis set for atoms.The basis set superposition error (BSSE) begins to converge for used Method/basis set. The gauge-invariant atomic orbital (GIAO) method and the continuous-set-of-gauge-transfo...

متن کامل

Nuclear magnetic shieldings in solution: Gauge invariant atomic orbital calculation using the polarizable continuum model

We present the gauge invariant atomic orbital ~GIAO! calculation of nuclear magnetic shieldings for solvated molecules described within the polarizable continuum model ~PCM!. The performance of the PCM-GIAO approach is tested in a benchmark calculation of isotropic C, N, and O shielding constants for CH3CN and CH3NO2 in vacuo and in water, both at the Hartree–Fock and density functional levels ...

متن کامل

Modeling of the hydration shell of Adenine

The molecular geometry of complex of adenine with 8 water molecules was calculated with Hartree-Fock (HF). The standard 6-31G(d) basis set has been employed. The existence of C-H…O Hydrogen bonds between the water molecules and the hydrophobic part of nucleobase is stablished. We optimized structures and computed interaction energies of all complexes of adenine with water molecules step by step...

متن کامل

Investigation of Solvent Effect on CUA Codon Mutation: NMR Shielding Study

P53 is one of the gene that has important role in human cell cycle and in the human cancers too.Models of codon substitution make it possible to separate mutational biases in the DNA fromselective constraints on the protein, and offer a great advantage over amino acid models forunderstanding the evolutionary process of proteins and protein-coding DNA sequences. In thiswork, we investigated abou...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • The Journal of chemical physics

دوره 120 3  شماره 

صفحات  -

تاریخ انتشار 2004