LatFit - Manual
نویسنده
چکیده
1 Description LatFit allows the conversion of a protein’s full atom structure representation in Protein Data Bank (PDB) format into a coarse grained lattice model representation. This is done by 1. fitting the Cα-atoms to neighbored lattice positions for representation of the protein backbone. 2. If side chains are modelled, Cβ or the center of mass of the residues are fitted to neighbored positions of the corresponding Cα atoms.
منابع مشابه
Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains
Lattice models are a common abstraction used in the study of protein structure, folding, and refinement. They are advantageous because the discretisation of space can make extensive protein evaluations computationally feasible. Various approaches to the protein chain lattice fitting problem have been suggested but only a single backbone-only tool is available currently. We introduce LatFit, a n...
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تاریخ انتشار 2009