Generalized Sparse Classifiers for Decoding Cognitive States in fMRI

نویسندگان

  • Bernard Ng
  • Arash Vahdat
  • Ghassan Hamarneh
  • Rafeef Abugharbieh
چکیده

The high dimensionality of functional magnetic resonance imaging (fMRI) data presents major challenges to fMRI pattern classification. Directly applying standard classifiers often results in overfitting, which limits the generalizability of the results. In this paper, we propose a new group of classifiers, “Generalized Sparse Classifiers” (GSC), to alleviate this overfitting problem. GSC draws upon the recognition that numerous standard classifiers can be reformulated under a regression framework, which enables state-of-theart regularization techniques, e.g. elastic net, to be directly employed. Building on this regularized regression framework, we exploit an extension of elastic net that permits general properties, such as spatial smoothness, to be integrated. GSC thus facilitates simultaneous sparse feature selection and classification, while providing greater flexibility in the choice of penalties. We validate on real fMRI data and demonstrate how explicitly modeling spatial correlations inherent in brain activity using GSC can provide superior predictive performance and interpretability over standard classifiers.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Decoding Cognitive States from fMRI Timeseries

Conventional analysis of functional magnetic resonance imaging (fMRI) data follows a regression-based approach, in which one identifies the neural correlates of a particular cognitive function by correlating individual voxel timecourses with a known pattern of stimulus presentations. However, one can reverse the direction of analysis; rather than using knowledge of the stimulus pattern to infer...

متن کامل

Generalized Sparse Regularization with Application to fMRI Brain Decoding

Many current medical image analysis problems involve learning thousands or even millions of model parameters from extremely few samples. Employing sparse models provides an effective means for handling the curse of dimensionality, but other propitious properties beyond sparsity are typically not modeled. In this paper, we propose a simple approach, generalized sparse regularization (GSR), for i...

متن کامل

An empirical comparison of different LDA methods in fMRI-based brain states decoding.

Decoding brain states from response patterns with multivariate pattern recognition techniques is a popular method for detecting multivoxel patterns of brain activation. These patterns are informative with respect to a subject's perceptual or cognitive states. Linear discriminant analysis (LDA) cannot be directly applied to fMRI data analysis because of the "few samples and large features" natur...

متن کامل

An empirical solution for over-pruning with a novel ensemble-learning method for fMRI decoding

BACKGROUND Recent functional magnetic resonance imaging (fMRI) decoding techniques allow us to predict the contents of sensory and motor events or participants' mental states from multi-voxel patterns of fMRI signals. Sparse logistic regression (SLR) is a useful pattern classification algorithm that has the advantage of being able to automatically select voxels to avoid over-fitting. However, S...

متن کامل

Fast Bootstrapping and Permutation Testing for Assessing Reproducibility and Interpretability of Multivariate fMRI Decoding Models

Multivariate decoding models are increasingly being applied to functional magnetic imaging (fMRI) data to interpret the distributed neural activity in the human brain. These models are typically formulated to optimize an objective function that maximizes decoding accuracy. For decoding models trained on full-brain data, this can result in multiple models that yield the same classification accur...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2010