Constraint Programming Approaches to the Protein Structure Prediction Problem

نویسنده

  • Alessandro Dal Palù
چکیده

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Protein Secondary Structure Prediction: a Literature Review with Focus on Machine Learning Approaches

DNA sequence, containing all genetic traits is not a functional entity. Instead, it transfers to protein sequences by transcription and translation processes. This protein sequence takes on a 3D structure later, which is a functional unit and can manage biological interactions using the information encoded in DNA. Every life process one can figure is undertaken by proteins with specific functio...

متن کامل

Two constraint-based tools for protein folding

Introduction. A protein is a list of linked units called aminoacids. There are 20 different kinds of aminoacids and the typical length of a protein is less than 500 units. The Protein Structure Prediction Problem (PSP) is the problem of predicting the 3D native conformation of a protein, when its aminoacid sequence is known. The process for reaching this state is called the protein folding. It ...

متن کامل

Comparing Mixed-Integer and Constraint Programming for the No-Wait Flow Shop Problem with Due Date Constraints

The impetus for this research was examining a flow shop problem in which tasks were expected to be successively carried out with no time interval (i.e., no wait time) between them. For this reason, they should be completed by specific dates or deadlines. In this regard, the efficiency of the models was evaluated based on makespan. To solve the NP-Hard problem, we developed two mathematical mode...

متن کامل

An Efficient Algorithm for Reducing the Duality Gap in a Special Class of the Knapsack Problem

A special class of the knapsack problem is called the separable nonlinear knapsack problem. This problem has received considerable attention recently because of its numerous applications. Dynamic programming is one of the basic approaches for solving this problem. Unfortunately, the size of state-pace will dramatically increase and cause the dimensionality problem. In this paper, an efficient a...

متن کامل

Constraint Techniques for Solving the Protein Structure Prediction Problem

The protein structure prediction problem is one of the most (if not the most) important problem in computational biology. This problem consists of nding the conformation of a protein (i.e., a sequence of amino-acids) with minimal energy. Because of the complexity of this problem, simpliied models like Dill's HP-lattice model 12] have become a major tool for investigating general properties of p...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2006