Nuckoddes and nucleotides : part 28 [ 1 ] . l 3 C - NMR spectra of 2 ' - deoxycytldine and 3 - deaza - 2 ' - deoxycytidine
نویسنده
چکیده
3-D*aza-2'-d*ozycytidin* (d(3-d*azaC)) it a structural analogu* of 2'-d*ozycytidin* (dC) and was shown to react in a different manner as a S'-triphosphate [2] and at a template nucleotide [3] on in vitro polymerization. In thit connection the tautomeric equilibrium of d(3-d*azaC) with its imino-enol form was investigated by C-NMR spsctroscopy. Using solvents with gradually changing hydrmtion properties (dimethyl sulfozide/water miztures) d(3-d*azaC) was measured and compared to dC the tautomeric equilibrium of which is mostly on th* amino-lactam sid* in both solvents (cf. Figure and Table}. The assignments of the H-decoupled signals are bas*d on H, C hetaronuclear correlation sp«ctra (data not shown) and on C-NMR spectra of cytidine from th* literature. Th* assignment of C(4) and C(2) of d(3-d*azaC) was confirmed by a fully coupled C-NMR spectrum in dg-dimethyl sulfozid* (JCH(163.05 ppm) = 6.2 Hz, broad*n*d doublet; JCH(157.74 ppm) = 9.7 Hz, doublet). The H-NMR spectrum of d(3-deazaC) in dg-dimelhyl sulfozide shows two ami no protons at 6.1 ppm (not thown). Therefore, du* to th* relatively small differences b*tw**n th* curves of the same carbon atom of both substrates (Figured it is concluded that no substantial thift of th* taulomeric equilibrium toward* th* imino-enol form of d(3-d*azaC) tak*t plac* through th* replacement of dimethyl sulfozid* with wal*r. I thank Prof. Ch. Tamm for his interest in th*s* investigations. They were supported by th* Swiss National Sci*nc* Foundation. Iihli;C-NME Data of dC (I) and of d(3Referencet: [1] Part 27: Charezuk, R. & Tamm, Ch. deazaC) 0 0 .(Hl-deeouple d algous In ppm (1987) Helv. Chim. Acta 70, 717-725. [2] Wachtl, M., relaliw to external TMS.) Kohler, P. Si Tamm, Ch. (1980) Helv. Chim. Acta 63, 2495-2302. [3] Charcruk, R., Tamra, Ch., Suri, B. Si Bickle, Th. A. (1986) Nucleic Adds Res. 14, 9530.
منابع مشابه
DNA with stable fluorinated dA and dG substitutes: syntheses, base pairing and 19F-NMR spectra of 7-fluoro-7-deaza-2'-deoxyadenosine and 7-fluoro-7-deaza-2'-deoxyguanosine.
Fluorinated DNA containing stable fluorine substituents in the "purine" base were synthesized for the first time. For this, the phosphoramidites of 7-fluoro-7-deaza-2'-deoxyadenosine and 7-fluoro-7-deaza-2'-deoxyguanosine were prepared and oligonucleotides were synthesized. The 7-fluoro substitution leads to increased duplex stability and more selective base pairing compared to the non-function...
متن کاملNucleotides. VI. Syntheses and spectral properties of some deazaadenylyl-deazaadenosines (dinucleoside monophosphates with unusual CD-spectrum) and closely related dinucleoside monophosphates.
Nine dinucleoside phosphates containing 1-deaza-(1A) and 3-deazaadenosine (3A) were prepared. Hypochromicity and CD spectra of these dimers were determined. It was found that varying degrees of base-stacking are operative with these oligonucleotides and their CD spectra fall into three classes. The first class CD spectra which are more or less similar in profile to those of adenylyl-(3'-5')-ade...
متن کامل23Na double-rotation NMR of sodium nucleotides leads to the discovery of a new dCMP hendecahydrate.
Obtaining definitive information concerning the coordination environment of sodium ions which balance the negative charges found in nucleotides is a challenging task. We show that high resolution 1D and 2D (23)Na NMR spectra of sodium nucleotides obtained in the solid state with the use of double-rotation (DOR) provide valuable structural information. Sensitive spin diffusion homonuclear correl...
متن کاملChemical modification of deoxycytidine at different sites yields adducts of different stabilities: characterization of N3- and O2-deoxycytidine and N3-deoxyuridine adducts of butadiene monoxide.
Eight adducts were characterized from the reaction of deoxycytidine with the chemical carcinogen, butadiene monoxide (BM). They were identified as diastereomeric pairs of N3-(2-hydroxy-3-buten-1-yl)deoxycytidine, N3-(2-hydroxy-3-buten-1-yl)deoxyuridine, N3-(1-hydroxy-3-buten-2-yl)deoxyuridine, and O2-(2-hydroxy-3-buten-1-yl)deoxycytidine based on UV spectra, 1H NMR, FAB/MS, and stability studie...
متن کاملCharacterization of the triterpene saponins of the roots and rhizomes of blue cohosh (Caulophyllum thalictroides).
Seven triterpene saponins were isolated from n-butanol fractions of blue cohosh (Caulophyllum thalictroides) roots and rhizomes. Their structures were established by spectral ((1)H NMR, (13)C NMR, 2D-NMR, and APCI-MS) techniques and chemical reactions as hederagenin 3-O-alpha-L-arabinopyranoside (1); caulophyllogenin 3-O-alpha-L-arabinopyranoside (2); hederagenin 3-O-beta-D-glucopyranosyl-(1-->...
متن کامل