PDZBase: a protein?Cprotein interaction database for PDZ-domains

نویسندگان

  • Thijs Beuming
  • Lucy Skrabanek
  • Masha Y. Niv
  • Piali Mukherjee
  • Harel Weinstein
چکیده

SUMMARY PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZBase contains approximately 300 such interactions, which have been manually extracted from > 200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).

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PDZBase: a protein–protein interaction database for PDZ-domains

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عنوان ژورنال:
  • Bioinformatics

دوره 21 6  شماره 

صفحات  -

تاریخ انتشار 2005