Browndye: A software package for Brownian dynamics
نویسندگان
چکیده
A new software package, Browndye, is presented for simulating the diffusional encounter of two large biological molecules. It can be used to estimate second-order rate constants and encounter probabilities, and to explore reaction trajectories. Browndye builds upon previous knowledge and algorithms from software packages such as UHBD, SDA, and Macrodox, while implementing algorithms that scale to larger systems.
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ورودعنوان ژورنال:
- Computer physics communications
دوره 181 11 شماره
صفحات -
تاریخ انتشار 2010