Markov Property and Scale-free Organization of Gene Expression
نویسندگان
چکیده
Evolutional gene expression organization has recently been studied by measuring the mRNA abundance (gene expression) for tens of thousands of genes in parallel (GeneChips arrays) [3]. These experiments on mRNA abundance have revealed that gene expression exhibits a scale-free organization, which is highly conserved in all the major five kingdoms of life, from Bacteria to Human [3]. Therefore, the gene expression distribution p(k) (probability that a gene has an amount of expression k) decays as a power-law k−γ [1]. In order to uncover the origin of this scale-free organization, we consider a stochastic process with Markov property (i.e., the future is governed by the present and does not depend on the past). This assumption is very natural for biology since all biological systems obey the physical laws, which also manifest this property. Surprisingly, scale-free organization spontaneously emerges from Markov property in the following construction (Fig. 1). (See [2] for more details.)
منابع مشابه
A Constructive Approach to Gene Expression Dynamics
The advent of new experimental genomic technologies and the massive increase of DNA sequence information is helping researchers better understand how our genes work. Recently, experiments on mRNA abundance (gene expression) have revealed that gene expression shows a stationary organization described by a power-law distribution (scalefree organization) (i.e., gene expression k decays as k−γ), wh...
متن کاملEvaluation of MLL2 (KMT2B) Gene Expression in Colorectal Cancer Tissue Compared with Adjacent Tumor Free Tissue
Background and Aims: An impairment of expression in MLL2 gene involved in histone methylation induces alteration in the methylation patterns at enhancers and causes several cancers including colon cancer. In this study, MLL2 expression was evaluated in North West of Iran. Materials and Methods: To evaluate the MLL2 expression in patients with colon cancer, 25 tumor samples and 25 samples of tu...
متن کاملInvestigation of an Optimized Context for the Expression of GFP as a Reporter Gene in Chlamydomonas Reinhardtii
Background: Chlamydomonas reinhardtii is a novel recombinant eukaryotic expression system with many advantages including fast growth rate, rapid scalability, absence of human pathogens and the ability to fold and assemble complex proteins accurately, however, obstacle relatively low expression level necessitates optimizing foreign gene expression in this system. The Green Fluorescent Protein (G...
متن کاملExpression of Recombinant Factor IX Using the Transient Gene Expression Technique
Background: Pilot and large-scale production of recombinant proteins requires the presence of stable clones capable of producing large quantities of recombinant proteins. Not only the process of selecting stable clones is time consuming, but also the continuous culturing of clones in large-scale production may cause loss of incoming plasmid and recombinant genes. Thus, considering the advanceme...
متن کاملManipulation of IL-10 gene expression by Toxoplasma gondii and its products
Background: This study was designed to evaluate whether or not T. gondii and its derivatives can change the gene expression level of IL-10 in murine leukocytes in vivo. Methods: Fifty BALB/c mice were divided into 5 groups, four of which received the excretory/secretory product (ESP) from cell culture medium, the ESP from cell free medium, the Toxoplasma lysate product (TLP) and the a...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2004