I ) Bond Cleavage Mediated by Cob [ N ] alamin

نویسندگان

  • F. Javier Torres
  • Luis Rincón
  • José Mora
چکیده

Cob[N]alamin, Cbl, is a macrocyclic complex (~ 200 atoms/molecule) composed of a cobalt atom of variable oxidation state (i.e., Co, Co, or Co) located at the center of an almostflat deprotonated corrin ring [1, 2]. This macromolecule is well-known for its relevance in different metabolic processes occurring at the cellular level. However, recent experimental evidence has demonstrated that, beyond its biological importance, Cbl plays a fundamental role in the reductive dehalogenation of halocarbon compounds [3, 4]. In the present work, the C— X (X = F, Cl, Br, and I) bond cleavage process mediated by Cbl is thoroughly studied by the computational description of the a SN2 model reaction: A DFT/SemiEmpirical ONIOM scheme was adopted, where different functional and basis-set combinations were tested together with the PM6 method. The results of the first stage of the study showed that the employed ONIOM approach is well-suited for describing the different forms of Cbls, being the computed geometric and electronic properties comparable with results obtained from a full DFT description by adopting state-of-the-art dispersion-corrected methods [5]. Regarding the Cbl potential to cleave the different C—X bonds, various methodologies for the analysis of chemical reactions such as: the reaction force concept, the natural bond orders and charges, the reaction synchronicity, among others, suggested that both the oxidation state and the coordination number of the Co atom are determinant factors in the efficiency of reaction. 12 a 17/Nov, 2017, Águas de Lindóia/SP, Brasil Key-words: DFT, Cob[N]alamin, Reductive Dehalogenation, Halocarbons Support: This work has been performed by employing the resources of the USFQ’s High Performance Computing System (HPC-USFQ). Authors would like to thank USFQ’s POLI-GRANTS program for financial support. References: [1] Lexa, D. and J.M. Saveant, The electrochemistry of vitamin B12. Accounts of Chemical Research, 1983. 16(7): p. 235-243. [2] Smith, E.L., et al., Partial synthesis of vitamin B12 coenzyme and analogues. Nature, 1962. 194(4834): p. 1175. [3] Guerrero-Barajas, C. and J.A. Field, Enhanced anaerobic biotransformation of carbon tetrachloride with precursors of vitamin B12 biosynthesis. Biodegradation, 2006. 17(4): p. 317-329. [4] Ochoa-Herrera, V., et al., Reductive defluorination of perfluorooctane sulfonate. Environmental Science and Technology, 2008. 42(9): p. 3260-3264. [5] Qu, Z.W., A. Hansen, and S. Grimme, Co-C bond dissociation energies in cobalamin derivatives and dispersion effects: Anomaly or just challenging? Journal of Chemical Theory and Computation, 2015. 11(3): p. 1037-1045.

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تاریخ انتشار 2017