SABIO-RK: A data warehouse for biochemical reactions and their kinetics
نویسندگان
چکیده
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions have great and promising application potential but require reliable kinetic data. In order to support the systems biology community with such data we have developed SABIO-RK (System for the Analysis of Biochemical Pathways Reaction Kinetics), a curated database with information about biochemical reactions and their kinetic properties, which allows researchers to obtain and compare kinetic data and to integrate them into models of biochemical networks. SABIO-RK is freely available for academic use at http://sabio.villa-bosch.de/SABIORK/.
منابع مشابه
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics
SABIO-RK (http://sabiork.h-its.org/) is a manually curated database containing data about biochemical reactions and their reaction kinetics. The data are primarily extracted from scientific literature and stored in a relational database. The content comprises both naturally occurring and alternatively measured biochemical reactions and is not restricted to any organism class. The data are made ...
متن کاملSABIO-RK—database for biochemical reaction kinetics
SABIO-RK (http://sabio.h-its.org/) is a web-accessible database storing comprehensive information about biochemical reactions and their kinetic properties. SABIO-RK offers standardized data manually extracted from the literature and data directly submitted from lab experiments. The database content includes kinetic parameters in relation to biochemical reactions and their biological sources wit...
متن کاملIntegration and Annotation of Kinetic Data of Biochemical Reactions in SABIO-RK
SABIO-RK is a curated database for the systems biology community containing biochemical reactions and their kinetic properties, the latter being manually extracted from literature sources. This information is crucial for the quantitative understanding of biological systems. Modellers and wet-lab scientists alike require reliable information about reaction kinetics which is normally contained in...
متن کاملSABIO-RK (System for the Analysis of Biochemical Pathways-Reaction Kinetics)
SABIO-RK is a database designed to store and offer access to information about biochemical reactions and their kinetics in a comprehensive and standardized manner. It integrates information from several sources to form a backbone of information necessary to include information about the kinetics of biochemical reactions. The kinetic data itself is primarily extracted from literature along with ...
متن کاملBiochemical Data Integration: Standardization of Parameter Units and Normalization of Chemical Compound Names in SABIO-RK
SABIO-RK (http://sabio.villa-bosch.de/SABIORK), a database system we have developed to provide experimental data, offers information about biochemical reactions and their corresponding kinetics [1]. The database is populated by merging information about reactions and pathways mainly derived from public databases with the corresponding kinetic data manually extracted from literature. The integra...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- J. Integrative Bioinformatics
دوره 4 شماره
صفحات -
تاریخ انتشار 2007