Dynamics of the Eigen and the Crow-Kimura models for molecular evolution.

نویسندگان

  • David B Saakian
  • Olga Rozanova
  • Andrei Akmetzhanov
چکیده

We introduce an alternative way to study molecular evolution within well-established Hamilton-Jacobi formalism, showing that for a broad class of fitness landscapes it is possible to derive dynamics analytically within the 1N accuracy, where N is the genome length. For a smooth and monotonic fitness function this approach gives two dynamical phases: smooth dynamics and discontinuous dynamics. The latter phase arises naturally with no explicite singular fitness function, counterintuitively. The Hamilton-Jacobi method yields straightforward analytical results for the models that utilize fitness as a function of Hamming distance from a reference genome sequence. We also show the way in which this method gives dynamical phase structure for multipeak fitness.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Quantum and Lattice Models of Biological Evolution

Noise in environments can cause mutation in genetic materials of biological systems. In this paper, I first introduce some molecular models of biological evolution, including Eigen model with connected mutation-selection scheme and Crow-Kimura (CK) model with parallel mutationselection scheme. Baake et al. mapped the CK model into a quantum spin model. Recently, Saakian and I did the similar ma...

متن کامل

Quasispecies theory for multiple-peak fitness landscapes.

We use a path integral representation to solve the Eigen and Crow-Kimura molecular evolution models for the case of multiple fitness peaks with arbitrary fitness and degradation functions. In the general case, we find that the solution to these molecular evolution models can be written as the optimum of a fitness function, with constraints enforced by Lagrange multipliers and with a term accoun...

متن کامل

Schwinger Boson Formulation and Solution of the Crow-Kimura and Eigen Models of Quasispecies Theory

Abstract We express the Crow-Kimura and Eigen models of quasispecies theory in a functional integral representation. We formulate the spin coherent state functional integrals using the Schwinger Boson method. In this formulation, we are able to deduce the long-time behavior of these models for arbitrary replication and degradation functions. We discuss the phase transitions that occur in these ...

متن کامل

Exactly solvable dynamics of the Eigen and the Crow-Kimura models

David B. Saakian, Olga Rozanova , and Andrei Akmetzhanov 4∗ Yerevan Physics Institute, Alikhanian Brothers St. 2, Yerevan 375036, Armenia Institute of Physics, Academia Sinica, Nankang, Taipei 11529, Taiwan Mathematics and Mechanics faculty, Moscow State University, Main building, Moscow 119992 Russia and Institute for Problems in Mechanics, Russian Academy of Sciences, Vernadsky Ave. 101-1, Mo...

متن کامل

Solution of the Crow-Kimura and Eigen models for alphabets of arbitrary size by Schwinger spin coherent states

To represent the evolution of nucleic acid and protein sequence, we express the parallel and Eigen models for molecular evolution in terms of a functional integral representation with an h-letter alphabet, lifting the two-state, purine/pyrimidine assumption often made in quasi-species theory. For arbitrary h and a general mutation scheme, we obtain the solution of this model in terms of a maxim...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Physical review. E, Statistical, nonlinear, and soft matter physics

دوره 78 4 Pt 1  شماره 

صفحات  -

تاریخ انتشار 2008