Supplementary Figures, Notes, and Tables for Millstone: software for multiplex microbial genome analysis and engineering

Supplementary Figures, Notes, and Table Legends Optimizing complex phenotypes through model- guided multiplex genome engineering

Unproductive splicing of SR genes associated with highly- and ultraconserved DNA elements

I. Supplementary methods and results ........................................................................S1 II. Supplementary figures (5) .......................................................................................S7 III. Supplementary tables (5)........................................................................................S12 IV. Supplementary notes (literature cited) ....

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing

MOTIVATION PIWI-interacting RNAs (piRNAs), 23-36 nt small silencing RNAs, repress transposon expression in the metazoan germ line, thereby protecting the genome. Although high-throughput sequencing has made it possible to examine the genome and transcriptome at unprecedented resolution, extracting useful information from gigabytes of sequencing data still requires substantial computational skil...

Machine learning framework for DNA hydroxymethylation prediction Supplementary Text, Figures and Tables for DIRECTION: A machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes

Theoretical studies on a carbonaceous molecular bearing: association thermodynamics and dual-mode rolling dynamics† †Electronic supplementary information (ESI) available: Supplementary figures, tables and atomic coordinates of representative geometries. See DOI: 10.1039/c5sc00335k

JST, ERATO, Isobe Degenerate p-Integrat Materials Research (AIMR), Tohoku Unive E-mail: [email protected] Department of Chemistry, Tohoku Univer E-mail: [email protected] Graduate School of Systems Engineering, Wakayama-shi 640-8510, Japan Institute for Quantum Chemical Exploratio 0022, Japan † Electronic supplementary information tables and atomic coordinates of r 10.1039/c5sc003...