Three-Layer Multiscale Approach Based on Extremely Localized Molecular Orbitals to Investigate Enzyme Reactions

نویسندگان

چکیده

Quantum mechanics/molecular mechanics (QM/MM) calculations are widely used embedding techniques to computationally investigate enzyme reactions. In most QM/MM computations, the quantum mechanical region is treated through density functional theory (DFT), which offers best compromise between chemical accuracy and computational cost. Nevertheless, obtain more accurate results, one should resort wave function-based methods, however lead a much larger cost already for relatively small QM subsystems. To overcome this drawback, we propose coupling of our QM/ELMO (quantum mechanics/extremely localized molecular orbital) approach with mechanics, thus introducing three-layer QM/ELMO/MM technique. The strategy an method in chemically relevant part system at level, while rest described frozen ELMOs. Since reproduces results fully computations within lower effort, it can be considered suitable extend range applicability scheme. paper, other than briefly presenting theoretical bases technique, will also discuss its validation on well-tested deprotonation acetyl coenzyme A by aspartate citrate synthase.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Localized orbitals for molecular calculations

We present an overview of the existing localization algorithms which have been or are being used to perform quantum chemical molecular calculations that take into account electronic correlation effects. The natural distinction between intrinsic and extrinsic localization methods is explained and developed. The advantages and drawbacks of specific methods are discussed in terms of CPU time requi...

متن کامل

Unitary Optimization of Localized Molecular Orbitals.

A unified formalism and its implementation is presented for Foster-Boys, fourth moment, Pipek-Mezey, and Edmiston-Ruedenberg type localization schemes of molecular orbitals through unitary optimization of the localizing transform matrix using a recently proposed algorithm [ Abrudan ; et al. Signal Processing 2009 , 89 , 1704 ]. A conjugate gradient algorithm is used with an efficient line searc...

متن کامل

Analysis of charge transfer effects in molecular complexes based on absolutely localized molecular orbitals.

A new method based on absolutely localized molecular orbitals (ALMOs) is proposed to measure the degree of intermolecular electron density delocalization (charge transfer) in molecular complexes. ALMO charge transfer analysis (CTA) enables separation of the forward and backward charge transfer components for each pair of molecules in the system. The key feature of ALMO CTA is that all charge tr...

متن کامل

On the Relationship. Between Localized Molecular Orbitals and Kekule Structures*

Localized molecular orbitals for n-systems of conjugated polycyclic hydrocarbons have been calculated using both intrinsic and external localization criteria relying only on molecular topology. For benzenoid aromatic compounds the intrinsic localized molecular orbital arrangement can always be associated to the Kekule structure of maximal Kekule index value. However hydrocarbons containing four...

متن کامل

Efficient construction of nonorthogonal localized molecular orbitals in large systems.

Localized molecular orbitals (LMOs) are much more compact representations of electronic degrees of freedom than canonical molecular orbitals (CMOs). The most compact representation is provided by nonorthogonal localized molecular orbitals (NOLMOs), which are linearly independent but are not orthogonal. Both LMOs and NOLMOs are thus useful for linear-scaling calculations of electronic structures...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Journal of Physical Chemistry A

سال: 2021

ISSN: ['1089-5639', '1520-5215']

DOI: https://doi.org/10.1021/acs.jpca.1c05040