SSHSuite: an integrated software package for analysis of large-scale suppression subtractive hybridization data
نویسندگان
چکیده
منابع مشابه
Suppression subtractive hybridization.
Suppression subtractive hybridization (SSH) is a widely used method for separating DNA molecules that distinguish two closely related DNA samples. Two of the main SSH applications are cDNA subtraction and genomic DNA subtraction. In fact, SSH is one of the most powerful and popular methods for generating subtracted cDNA or genomic DNA libraries. The SSH method is based on a suppression PCR effe...
متن کاملA Mathematical Model for Suppression Subtractive Hybridization
Suppression subtractive hybridization (SSH) is frequently used to unearth differentially expressed genes on a whole-genome scale. Its versatility is based on combining cDNA library subtraction and normalization, which allows the isolation of sequences of varying degrees of abundance and differential expression. SSH is a complex process with many adjustable parameters that affect the outcome of ...
متن کاملLarge Scale Experiments Data Analysis for Estimation of Hydrodynamic Force Coefficients Part 1: Time Domain Analysis
This paper describes various time-domain methods useful for analyzing the experimental data obtained from a circular cylinder force in terms of both wave and current for estimation of the drag and inertia coefficients applicable to the Morison’s equation. An additional approach, weighted least squares method is also introduced. A set of data obtained from experiments on heavily roughened circul...
متن کاملA partition-based algorithm for clustering large-scale software systems
Clustering techniques are used to extract the structure of software for understanding, maintaining, and refactoring. In the literature, most of the proposed approaches for software clustering are divided into hierarchical algorithms and search-based techniques. In the former, clustering is a process of merging (splitting) similar (non-similar) clusters. These techniques suffered from the drawba...
متن کاملLarge Scale Experiments Data Analysis for Estimation of Hydrodynamic Force Coefficients
This paper describes the various frequency domain methods which may be used to analyze experiments data on the force experienced by a circular cylinder in wave and current to estimate drag and inertia coefficients for use in Morison’s equation. An additional approach, system identification techniques (SIT) is also introduced. A set of data obtained from experiments on heavily roughened circular...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BioTechniques
سال: 2004
ISSN: 0736-6205,1940-9818
DOI: 10.2144/04366bc02