SparRec: An effective matrix completion framework of missing data imputation for GWAS
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چکیده
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Corrigendum: SparRec: An effective matrix completion framework of missing data imputation for GWAS
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متن کاملSparRec: An effective matrix completion framework of missing data imputation for GWAS
Genome-wide association studies present computational challenges for missing data imputation, while the advances of genotype technologies are generating datasets of large sample sizes with sample sets genotyped on multiple SNP chips. We present a new framework SparRec (Sparse Recovery) for imputation, with the following properties: (1) The optimization models of SparRec, based on low-rank and l...
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Multivariate time series data are found in a variety of fields such as bioinformatics, biology, genetics, astronomy, geography and finance. Many time series datasets contain missing data. Multivariate time series missing data imputation is a challenging topic and needs to be carefully considered before learning or predicting time series. Frequent researches have been done on the use of diffe...
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Most current genotype imputation methods are model-based and computationally intensive, taking days to impute one chromosome pair on 1000 people. We describe an efficient genotype imputation method based on matrix completion. Our matrix completion method is implemented in MATLAB and tested on real data from HapMap 3, simulated pedigree data, and simulated low-coverage sequencing data derived fr...
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Multiple imputation provides a useful strategy for dealing with data sets with missing values. Instead of filling in a single value for each missing value, Rubin’s (1987) multiple imputation procedure replaces each missing value with a set of plausible values that represent the uncertainty about the right value to impute. These multiply imputed data sets are then analyzed by using standard proc...
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ژورنال
عنوان ژورنال: Scientific Reports
سال: 2016
ISSN: 2045-2322
DOI: 10.1038/srep35534