S3: Summary

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Text S3

We sought to characterize WPEC by quantifying per-hour log-fold change. To do so, we regressed the log gene expression on time (hour) and extracted the linear slope. For genes with monotonically increasing or decreasing expression trajectories, the utility of our WPEC measure to discriminate is obvious. Our WPEC measure can also discriminate with more complex trajectories which may be reflectiv...

Thesis Summary

This article has no abstract

S3 Table

study design, analysis and interpretation The following table summarizes several key concepts relating to sample preparation and library construction that may influence analysis and interpretation of RNA-seq data. Several initiatives are underway to develop standards and best practices that cover many of these concepts. These include: the Sequencing Quality Control (SEQC) consortium [2], the En...

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