RNA modeling, naturally

Thermodynamic characterization of naturally occurring RNA tetraloops.

Although tetraloops are one of the most frequently occurring secondary structure motifs in RNA, less than one-third of the 30 most frequently occurring RNA tetraloops have been thermodynamically characterized. Therefore, 24 stem-loop sequences containing common tetraloops were optically melted, and the thermodynamic parameters DeltaH degrees , DeltaS degrees , DeltaG degrees (37,) and T(M) for ...

Modeling Naturally Occurring Wildfires Across the US Using Niche Modeling

A naturally occurring DNA-RNA complex from Neurospora crassa.

Rabies Virus RNA in Naturally Infected Vampire Bats, Northeastern Brazil

Jacob Brenner, Chris Oura, Itai Asis, Sushila Maan, Dani Elad, Narender Maan, Orly Friedgut, Kyriaki Nomikou, Ditza Rotenberg, Valizar Bumbarov, Peter Mertens, Hagai Yadin, and Carrie Batten Author affi liations: Kimron Veterinary Institute, Bet Dagan, Israel (J. Brenner, D. Elad, O. Friedgut, D. Rotenberg, V. Bumbarov, H. Yadin); Institute for Animal Health, Pirbright, UK (C. Oura, S. Maan, N....

Thermodynamic characterization of tandem mismatches found in naturally occurring RNA

Many naturally occurring RNA structures contain single mismatches. However, the algorithms currently used to predict RNA structure from sequence rely on a minimal set of data for single mismatches, most of which occur rather infrequently in nature. As a result, several approximations and assumptions are used to predict the stability of RNA duplexes containing the most common single mismatches. ...