Protein folds and functions

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Protein folds and functions.

BACKGROUND The recent rapid increase in the number of available three-dimensional protein structures has further highlighted the necessity to understand the relationship between biological function and structure. Using structural classification schemes such as SCOP, CATH and DALI, it is now possible to explore global relationships between protein fold and function, something which was previousl...

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Protein folds, functions and evolution.

The evolution of proteins and their functions is reviewed from a structural perspective in the light of the current database. Protein domain families segregate unequally between the three major classes, the 32 different architectures and almost 700 folds observed to date. We find that the number of new topologies is still increasing, although 25 new structures are now determined for each new to...

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Mutational tipping points for switching protein folds and functions.

While disordered to ordered rearrangements are relatively common, the ability of proteins to switch from one ordered fold to a completely different fold is generally regarded as rare, and few fold switches have been characterized. Here, in a designed system, we examine the mutational requirements for transitioning between folds and functions. We show that switching between monomeric 3α and 4β+α...

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Inverting Functions as Folds

This paper is devoted to the proof and applications of a theorem giving conditions under which the inverse of a partial function can be expressed as a relational hylomorphism. The theorem is a generalisation of a previous result, due to Bird and de Moor, that gave conditions under which a total function can be expressed a relational fold. The theorem is illustrated with three problems, all deal...

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Protein folds and protein folding.

The classification of protein folds is necessarily based on the structural elements that distinguish domains. Classification of protein domains consists of two problems: the partition of structures into domains and the classification of domains into sets of similar structures (or folds). Although similar topologies may arise by convergent evolution, the similarity of their respective folding pa...

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ژورنال

عنوان ژورنال: Structure

سال: 1998

ISSN: 0969-2126

DOI: 10.1016/s0969-2126(98)00089-6