Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes
نویسندگان
چکیده
منابع مشابه
Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes
Rapidly increasing numbers of organisms have been completely sequenced and most of their genes identified; homologies among these genes are also getting established. It thus has become possible to represent whole genomes as ordered lists of gene identifiers and to study the evolution of these entities through computational means, in systematics as well as in comparative genomics. While dealing ...
متن کاملPhylogenetic inference using whole genomes.
The availability of genome-wide data provides unprecedented opportunities for resolving difficult phylogenetic relationships and for studying population genetic processes of mutation, selection, and recombination on a genomic scale. The use of appropriate statistical models becomes increasingly important when we are faced with very large datasets, which can lead to improved precision but not ne...
متن کاملPhylogenetic Analysis of Whole Genomes - (Keynote Talk)
The rapidly increasing number of sequenced genomes offers the chance to resolve longstanding questions about the evolutionary history of certain groups of organisms, to develop a better understanding of evolution, to make substantial advances in functional genomics, and to start bridging genomics and genetics. Comparative genomics is the term used today for much of the work carried out in whole...
متن کاملPhylogenetic and evolutionary analyses of St. Louis encephalitis virus genomes.
St. Louis encephalitis virus belongs to the Japanese encephalitis virus serocomplex of the genus Flavivirus, family Flaviviridae. Since the first known epidemic in 1933, the virus has been isolated from a variety of geographical, temporal, and host origins. We have sequenced 10,236 nucleotides of the open reading frame (93.6% of the full-length genome) of 23 of these strains, and have used the ...
متن کاملCVTree: a phylogenetic tree reconstruction tool based on whole genomes
Composition Vector Tree (CVTree) implements a systematic method of inferring evolutionary relatedness of microbial organisms from the oligopeptide content of their complete proteomes (http://cvtree.cbi.pku.edu.cn). Since the first bacterial genomes were sequenced in 1995 there have been several attempts to infer prokaryote phylogeny from complete genomes. Most of them depend on sequence alignme...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: PLoS Computational Biology
سال: 2005
ISSN: 1553-7358
DOI: 10.1371/journal.pcbi.0010003