Population genetics of foxtail millet and its wild ancestor

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Population Genetics and Structure of a Global Foxtail Millet Germplasm Collection

Hari D. Upadhyaya, Mani Vetriventhan, Santosh P. Deshpande, and Selvanayagam Sivasubramani, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502 324, Telangana, India; Hari D. Upadhyaya, Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA, and Institute of Agriculture, University of Western Australia, Crawley, WA 6009, Australia; C. To...

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Foxtail millet (Setaria italica) is a small diploid C4 panicoid crop species, whose genome is being sequenced by the Joint Genome Institute (JGI) of the Department of Energy. The rationale for sequencing foxtail millet is that it is closely related to the bioenergy grasses switchgrass (Panicum virgatum), napiergrass (Pennisetum purpureum), and pearl millet (Pennisetum glaucum), yet is a more tr...

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Genetic Diversity and Population Structure of Chinese Foxtail Millet [Setaria italica (L.) Beauv.] Landraces

As an ancient cereal of great importance for dryland agriculture even today, foxtail millet (Setaria italica) is fast becoming a new plant genomic model crop. A genotypic analysis of 250 foxtail millet landraces, which represent 1% of foxtail millet germplasm kept in the Chinese National Gene Bank (CNGB), was conducted with 77 SSRs covering the foxtail millet genome. A high degree of molecular ...

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Taxonomic structure and functional association of foxtail millet root microbiome.

The root microbes play pivotal roles in plant productivity, nutrient uptakes, and disease resistance. The root microbial community structure has been extensively investigated by 16S/18S/ITS amplicons and metagenomic sequencing in crops and model plants. However, the functional associations between root microbes and host plant growth are poorly understood. This work investigates the root bacteri...

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Phytolith Analysis for Differentiating between Foxtail Millet (Setaria italica) and Green Foxtail (Setaria viridis)

Foxtail millet (Setaria italica) is one of the oldest domesticated cereal crops in Eurasia, but identifying foxtail millets, especially in charred grains, and differentiating it from its wild ancestor, green foxtail (Setaria viridis), in the archaeobotanical remains, is still problematic. Phytolithic analysis provides a meaningful method for identifying this important crop. In this paper, the s...

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ژورنال

عنوان ژورنال: BMC Genetics

سال: 2010

ISSN: 1471-2156

DOI: 10.1186/1471-2156-11-90