Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance
نویسندگان
چکیده
منابع مشابه
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
Background As next generation sequence technology has advanced, there have been parallel advances in genome-scale analysis programs for determining evolutionary relationships as proxies for epidemiological relationship in public health. Most new programs skip traditional steps of ortholog determination and multi-gene alignment, instead identifying variants across a set of genomes, then summariz...
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ژورنال
عنوان ژورنال: Journal of Clinical Microbiology
سال: 2019
ISSN: 0095-1137,1098-660X
DOI: 10.1128/jcm.01816-18