منابع مشابه
Neighbor-joining revealed.
It is nearly 20 years since the landmark paper (Saitou and Nei 1987) in Molecular Biology and Evolution introducing Neighbor-Joining (NJ). The method has become the most widely used method for building phylogenetic trees from distances, and the original paper has been cited about 13,000 times (Science Citation Index). Yet the question "what does the NJ method seek to do?" has until recently pro...
متن کاملREVIEW Neighbor-Joining Revealed
It is nearly 20 years since the landmark paper (Saitou and Nei 1987) in Molecular Biology and Evolution introducing Neighbor-Joining (NJ). The method has become the most widely used method for building phylogenetic trees from distances, and the original paper has been cited about 13,000 times (Science Citation Index). Yet the question ‘‘what does the NJ method seek to do?’’ has until recently p...
متن کاملFast Neighbor Joining
Reconstructing the evolutionary history of a set of species is a fundamental problem in biology and methods for solving this problem are gaged based on two characteristics: accuracy and efficiency. Neighbor Joining (NJ) is a so-called distance-based method that, thanks to its good accuracy and speed, has been embraced by the phylogeny community. It takes the distances between n taxa and produce...
متن کاملA fast neighbor joining method.
With the rapid development of sequencing technologies, an increasing number of sequences are available for evolutionary tree reconstruction. Although neighbor joining is regarded as the most popular and fastest evolutionary tree reconstruction method [its time complexity is O(n(3)), where n is the number of sequences], it is not sufficiently fast to infer evolutionary trees containing more than...
متن کاملSpecies tree estimation using Neighbor Joining.
Recent theoretical work has demonstrated that Neighbor Joining applied to concatenated DNA sequences is a statistically consistent method of species tree reconstruction. This brief note compares the accuracy of this approach to other popular statistically consistent species tree reconstruction algorithms including ASTRAL-II Neighbor Joining using average gene-tree internode distances (NJst) and...
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ژورنال
عنوان ژورنال: Molecular Biology and Evolution
سال: 2006
ISSN: 0737-4038,1537-1719
DOI: 10.1093/molbev/msl072