N-Acetylgalactosamine Utilization Pathway and Regulon in Proteobacteria
نویسندگان
چکیده
منابع مشابه
Comparative genomic reconstruction of N-acetylgalactosamine catabolic pathways and transcriptional regulons in Proteobacteria
In Escherichia coli N-acetylgalactosamine (GalNAc) and galactosamine (GalN) utilization pathway is controlled by the DeoR-family transcription factor AgaR. We applied comparative genomics approach to reconstruct AgaR regulon in multiple genomes from the Proteobacteria phylum. We predicted four types of AgaR binding DNA motifs that share a common pattern CTTTC. We reconstructed the AgaR regulons...
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MOTIVATION Motif-prediction algorithm capabilities for the analysis of bacterial regulatory networks and the prediction of new regulatory sites can be greatly enhanced by the use of comparative genomics approaches. In this study, we make use of a consensus-building algorithm and comparative genomics to conduct an in-depth analysis of the LexA-regulon of gamma proteobacteria, and we use the infe...
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ژورنال
عنوان ژورنال: Journal of Biological Chemistry
سال: 2012
ISSN: 0021-9258
DOI: 10.1074/jbc.m112.382333