Logomaker: beautiful sequence logos in Python
نویسندگان
چکیده
منابع مشابه
compariSeq: Rethinking Sequence Logos
Comparing Sequence Charts (compariSeq) is a redesign of traditional sequence logos for the task of comparing multiple biological sequences. All relevant data encoded in traditional sequence logos is conserved, however, attention is directed to the most important data, colors are more perceptually accessible, and the task of direct comparison at particular locations is supported.
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The need to measure sequence similarity arises in many applicitation domains and often coincides with sequence alignment: the more similar two sequences are, the better they can be aligned. Aligning sequences not only shows how similar sequences are, it also shows where there are differences and correspondences between the sequences. Traditionally, the alignment has been considered for sequence...
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A graphical method is presented for displaying the patterns in a set of aligned sequences. The characters representing the sequence are stacked on top of each other for each position in the aligned sequences. The height of each letter is made proportional to its frequency, and the letters are sorted so the most common one is on top. The height of the entire stack is then adjusted to signify the...
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enoLOGOS is a web-based tool that generates sequence logos from various input sources. Sequence logos have become a popular way to graphically represent DNA and amino acid sequence patterns from a set of aligned sequences. Each position of the alignment is represented by a column of stacked symbols with its total height reflecting the information content in this position. Currently, the availab...
متن کاملProfileGrids: a sequence alignment visualization paradigm that avoids the limitations of Sequence Logos
BACKGROUND The 2013 BioVis Contest provided an opportunity to evaluate different paradigms for visualizing protein multiple sequence alignments. Such data sets are becoming extremely large and thus taxing current visualization paradigms. Sequence Logos represent consensus sequences but have limitations for protein alignments. As an alternative, ProfileGrids are a new protein sequence alignment ...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2019
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btz921