LiveBench-1: Continuous benchmarking of protein structure prediction servers
نویسندگان
چکیده
منابع مشابه
LiveBench-1: continuous benchmarking of protein structure prediction servers.
We present a novel, continuous approach aimed at the large-scale assessment of the performance of available fold-recognition servers. Six popular servers were investigated: PDB-Blast, FFAS, T98-lib, GenTHREADER, 3D-PSSM, and INBGU. The assessment was conducted using as prediction targets a large number of selected protein structures released from October 1999 to April 2000. A target was selecte...
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The aim of the LiveBench experiment is to provide a continuous evaluation of structure prediction servers in order to inform potential users about the current state-of-the-art structure prediction tools and in order to help the developers to analyze and improve the services. This round of the experiment was conducted in parallel to the blind CAFASP-3 evaluation experiment. The data collected al...
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The aim of LiveBench is to provide a continuous evaluation of structure prediction servers to inform developers and users about the current state-of-the-art structure prediction tools. LiveBench differs from other evaluation experiments because it is a large-scale and a fully automated procedure. Since LiveBench-1, which finished in April 2000, and related but independent CASP3 and CAFASP1 expe...
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UNLABELLED Evaluation of protein structure prediction methods is difficult and time-consuming. Here, we describe EVA, a web server for assessing protein structure prediction methods, in an automated, continuous and large-scale fashion. Currently, EVA evaluates the performance of a variety of prediction methods available through the internet. Every week, the sequences of the latest experimentall...
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We present the results of the evaluation of the latest LiveBench-8 experiment. These results provide a snapshot view of the state of the art in automated protein structure prediction, just before the 2004 CAFASP-4/CASP-6 experiments begin. The last CAFASP/CASP experiments demonstrated that automated meta-predictors entail a significant advance in the field, already challenging most human expert...
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ژورنال
عنوان ژورنال: Protein Science
سال: 2001
ISSN: 0961-8368,1469-896X
DOI: 10.1110/ps.40501