KPP: KEGG Pathway Painter
نویسندگان
چکیده
منابع مشابه
Deductive Calculation Library for KEGG Pathway Simulation
KEGG, Kyoto Encyclopedia of Genes and Genomes, project consists of three types of data, pathways, hierarchies, and binary relations, that are used to represent biological knowledge. We present here a C++ library for e cient calculation of possible pathways from binary relations. In practice, the library is used to calculate metabolic pathways from the substrate-product relations of enzymes stor...
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Pathway-level visualization of omics data provides an essential means for systems biology, to capture the systematic properties of the inner activities of cells. Here we describe a web-based resource consisting of a web-application for the visualization of complex omics data onto KEGG pathways to overview all entities in the context of cellular pathways, and databases created with the software ...
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SUMMARY KEGG pathway database is a collection of manually drawn pathway maps accompanied with KGML format files intended for use in automatic analysis. KGML files, however, do not contain the required information for complete reproduction of all the events indicated in the static image of a pathway map. Several parsers and editors of KEGG pathways exist for processing KGML files. We introduce K...
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EGENES is a knowledge-based database for efficient analysis of plant ESTs that was recently added to the KEGG suite of databases. It links plant genomic information with higher order functional information in a single database. It also provides gene indices for each genome. The genomic information in EGENES is a collection of EST-contigs constructed from assembly of expressed sequence tags (EST...
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Scientific visualization is a key technology to enhance our understanding of huge masses of omics data, especially for cell-wide, high-throughput measurements of the physiological networks. We have developed a web application that visualizes complex omics data of multiple layers simultaneously, including transcriptome, proteome, and metabolome, onto an integrated pathway diagram derived by conn...
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ژورنال
عنوان ژورنال: BMC Systems Biology
سال: 2015
ISSN: 1752-0509
DOI: 10.1186/1752-0509-9-s2-s3