Inverted and mirror repeats in model nucleotide sequences

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چکیده

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Inverted and mirror repeats in model nucleotide sequences.

We analytically and numerically study the probabilistic properties of inverted and mirror repeats in model sequences of nucleic acids. We consider both perfect and nonperfect repeats, i.e., repeats with mismatches and gaps. The considered sequence models are independent identically distributed (i.i.d.) sequences, Markov processes and long-range sequences. We show that the number of repeats in c...

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ژورنال

عنوان ژورنال: Physical Review E

سال: 2007

ISSN: 1539-3755,1550-2376

DOI: 10.1103/physreve.76.041914